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The map label for this gene is xerC [H]

Identifier: 189499195

GI number: 189499195

Start: 206045

End: 207199

Strand: Direct

Name: xerC [H]

Synonym: Cphamn1_0211

Alternate gene names: 189499195

Gene position: 206045-207199 (Clockwise)

Preceding gene: 189499194

Following gene: 189499196

Centisome position: 7.53

GC content: 51.43

Gene sequence:

>1155_bases
ATGGACGTTTCATCCGTACACTTGCGGAAGCGGAAGCAGGGGAAGAGCGGGCGCATAAGCCTGTATCTTGAGTTTTACAA
GGGCGCGGTTACACAGCCTGACGGGAAAGCGAAGGTTCTCAGGGATTACGAATACCTGAACCTGTATCTTGACGACAAGC
CGAGAACAGCGGCGGAAAAAGAGCATAACAAGAATATACTTGAGCTTGCCAAGTCGATCAAGGCAAAGCGGGAACTTGAG
ATCAAGAACGGGCAGTACGGGTTTGACTCCTGCGTCAAGGCAAAAGCCCTGTTTCTCTCTTACTTCAAGGCTGAAGCGGA
AAAGAAATCGAAGCCGGGCTACCCCGGTAATTGGGGCAGTACTCTCAAGCACCTCACCAGATTTGTCGAGAAGCACCGTT
CTGTTCGGGTCACCTTCCGGGAGATCGACAAGGCGTTTTGCGAAGGGTTCAAGGACTATCTCCGGGATGAGGCGACAACG
AGAACGGGGAAAGGGCTCTCTTCAGCGTCTCAGGGTGCTTATTACGGGAAGTTCAAGGCTTGCTTGAATAAGGCTATAAA
GGACGGAATTCTGTCCGTTGATCCTGCAAAGGGCGTGGCGCGCCCGAAGATCGTTTCACACAAGCGGGAATATCTGACAT
TCGACGAACTTCAGGCAATGGCTAAGGCTGAGTGCCGGAACCCTACGCTGAAGCGGATGTTCCTGTTCTCTTGCTTGACC
GGGTTACGTTTTTCTGATTGTCATAAACTGATATGGGGTGAAGTGGAACAGTACGGCGACGGGTGGCGGATCGTATTTCA
CCAGCAGAAGACGAAAGGACTTCAGTATCACGACATTTCACAGCAGGCGCGGGAGCTGATGGGGGAACAGGGCGCGGCTG
ATGACCGGGTGTTCTTCGCCATAAGCAAGTATTCGGCGTATCTCAGTATCGTTCTCCGGGAATGGGTTTTGAAGGCAGGC
ATAACAAAACACCTGACGTTTCATTCAGGCCGTCACACCTTCGCAGTGTTACAACTGGAGAATGGGACAGACATTTACAC
ACTCAGCAAGCTATTGGGACATAGAGAGATCGAGGTAACGGCTATTTATGCCGATATTCTGGATAAGAAGCGGCGTGAGG
CGATGACTGAGCGGATTCCTGAACTGAGTTTATGA

Upstream 100 bases:

>100_bases
GGTTTTTCGGCTATCAGTCAAGTCTCTAAGTGACTGATATAAATTGATTTGCTGACGTTCCATTTTGTTGCTGTTCCATA
AGGTCAAACAGGGAAAGAGC

Downstream 100 bases:

>100_bases
CTAATTTAAGCGGATCGGTTTTAGCCGCTGAACTGGCGTTACGGTTACAAACCAATACTAATATTTACATTATGTACAAG
TTATTCCTGATTTTGGTTCT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MDVSSVHLRKRKQGKSGRISLYLEFYKGAVTQPDGKAKVLRDYEYLNLYLDDKPRTAAEKEHNKNILELAKSIKAKRELE
IKNGQYGFDSCVKAKALFLSYFKAEAEKKSKPGYPGNWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYLRDEATT
RTGKGLSSASQGAYYGKFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTFDELQAMAKAECRNPTLKRMFLFSCLT
GLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGLQYHDISQQARELMGEQGAADDRVFFAISKYSAYLSIVLREWVLKAG
ITKHLTFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTERIPELSL

Sequences:

>Translated_384_residues
MDVSSVHLRKRKQGKSGRISLYLEFYKGAVTQPDGKAKVLRDYEYLNLYLDDKPRTAAEKEHNKNILELAKSIKAKRELE
IKNGQYGFDSCVKAKALFLSYFKAEAEKKSKPGYPGNWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYLRDEATT
RTGKGLSSASQGAYYGKFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTFDELQAMAKAECRNPTLKRMFLFSCLT
GLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGLQYHDISQQARELMGEQGAADDRVFFAISKYSAYLSIVLREWVLKAG
ITKHLTFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTERIPELSL
>Mature_384_residues
MDVSSVHLRKRKQGKSGRISLYLEFYKGAVTQPDGKAKVLRDYEYLNLYLDDKPRTAAEKEHNKNILELAKSIKAKRELE
IKNGQYGFDSCVKAKALFLSYFKAEAEKKSKPGYPGNWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYLRDEATT
RTGKGLSSASQGAYYGKFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTFDELQAMAKAECRNPTLKRMFLFSCLT
GLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGLQYHDISQQARELMGEQGAADDRVFFAISKYSAYLSIVLREWVLKAG
ITKHLTFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTERIPELSL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerD binding sites by a short central region, forming

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=226, Percent_Identity=25.6637168141593, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43960; Mature: 43960

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSSVHLRKRKQGKSGRISLYLEFYKGAVTQPDGKAKVLRDYEYLNLYLDDKPRTAAEK
CCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHCCEEEEEEEECCCCCCHHHH
EHNKNILELAKSIKAKRELEIKNGQYGFDSCVKAKALFLSYFKAEAEKKSKPGYPGNWGS
HHCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
TLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYLRDEATTRTGKGLSSASQGAYYGKFKA
HHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
CLNKAIKDGILSVDPAKGVARPKIVSHKREYLTFDELQAMAKAECRNPTLKRMFLFSCLT
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
GLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGLQYHDISQQARELMGEQGAADDRVFFA
CCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEE
ISKYSAYLSIVLREWVLKAGITKHLTFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVT
HHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCEEEE
AIYADILDKKRREAMTERIPELSL
EHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDVSSVHLRKRKQGKSGRISLYLEFYKGAVTQPDGKAKVLRDYEYLNLYLDDKPRTAAEK
CCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHCCEEEEEEEECCCCCCHHHH
EHNKNILELAKSIKAKRELEIKNGQYGFDSCVKAKALFLSYFKAEAEKKSKPGYPGNWGS
HHCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
TLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYLRDEATTRTGKGLSSASQGAYYGKFKA
HHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
CLNKAIKDGILSVDPAKGVARPKIVSHKREYLTFDELQAMAKAECRNPTLKRMFLFSCLT
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
GLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGLQYHDISQQARELMGEQGAADDRVFFA
CCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEE
ISKYSAYLSIVLREWVLKAGITKHLTFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVT
HHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCEEEE
AIYADILDKKRREAMTERIPELSL
EHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9675854 [H]