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The map label for this gene is dmsD [H]

Identifier: 189424212

GI number: 189424212

Start: 1198812

End: 1199450

Strand: Reverse

Name: dmsD [H]

Synonym: Glov_1147

Alternate gene names: 189424212

Gene position: 1199450-1198812 (Counterclockwise)

Preceding gene: 189424213

Following gene: 189424211

Centisome position: 30.62

GC content: 57.12

Gene sequence:

>639_bases
ATGCCGGAACAAACCGCCACCACCTGCCGCGAAGACAGCTACCGGCTTCTGGCTGCCTGTTACTACTCACCCAGCCAGGC
CCTGCTTGAAGAAAACTGCTGTATCTCACTGGCCGGCCTGCTGTCGGACATGGTGCCGGATGCAGCTGCTTCAGCGGCAG
AAGCTGCTGAACTTTTACACAAAATAAGTCTTGATGAACTGGTGGTGGAACACTCCCGCCTTTTTATGGGACCGTTTAAA
CTGGTAGCCCCACCCTATGGCTCAGTCTGGCTGGATGAGCAGAAGTCCGTGATGGGGGATTCCACGGCAAAGGTGGCTGC
CTTCTACCACGCCAACGGCCTGCATCTGGCCGATGACTTCCATGAACTGCCGGATCATTTTGCCGTTGAGCTGGAGTTCA
TGTCGTACATGGCCTTTAAACAGCGGGAAGCCGCCGCTGCCGGAGATACTCCGGAGGCAGACCGGCTGAGAGACCTGCAG
CGTCAATTTCTGGGTACCTTCCTCTTACCCTGGCTAGGGCCGTTTACCGATACGATCATTGAAGACGCTGAGGCCCCGTT
TTATCAGGCGATTGCCCGCTGTACCGCCGCGTTTGTCACCGCTGATGCCCGTAACCTGAACGCAGCCGCCCATGTCTAG

Upstream 100 bases:

>100_bases
CCTTCAAGGCAACTGCCAAGATCTGACCATACTGTTAAGCTGTTAACTGTACTAACGGGATGGGACGAAAGTCCCATCCC
GCTTTGCTAAGGAGCCAACC

Downstream 100 bases:

>100_bases
CAGTGCAAAAAAACAGGTGCCTGTCGGCAGCCGGGATGATCTGCAGATCGACCCTTCCCGCTGTCTGCGAACACGCTTCA
GTGAGAGCGTCTGCAACCAT

Product: cytoplasmic chaperone TorD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MPEQTATTCREDSYRLLAACYYSPSQALLEENCCISLAGLLSDMVPDAAASAAEAAELLHKISLDELVVEHSRLFMGPFK
LVAPPYGSVWLDEQKSVMGDSTAKVAAFYHANGLHLADDFHELPDHFAVELEFMSYMAFKQREAAAAGDTPEADRLRDLQ
RQFLGTFLLPWLGPFTDTIIEDAEAPFYQAIARCTAAFVTADARNLNAAAHV

Sequences:

>Translated_212_residues
MPEQTATTCREDSYRLLAACYYSPSQALLEENCCISLAGLLSDMVPDAAASAAEAAELLHKISLDELVVEHSRLFMGPFK
LVAPPYGSVWLDEQKSVMGDSTAKVAAFYHANGLHLADDFHELPDHFAVELEFMSYMAFKQREAAAAGDTPEADRLRDLQ
RQFLGTFLLPWLGPFTDTIIEDAEAPFYQAIARCTAAFVTADARNLNAAAHV
>Mature_211_residues
PEQTATTCREDSYRLLAACYYSPSQALLEENCCISLAGLLSDMVPDAAASAAEAAELLHKISLDELVVEHSRLFMGPFKL
VAPPYGSVWLDEQKSVMGDSTAKVAAFYHANGLHLADDFHELPDHFAVELEFMSYMAFKQREAAAAGDTPEADRLRDLQR
QFLGTFLLPWLGPFTDTIIEDAEAPFYQAIARCTAAFVTADARNLNAAAHV

Specific function: Binds to the twin-arginine signal peptide of dmsA and torA. Could be required for the biogenesis of DMSO reductase rather than for the targeting of dmsA to the inner membrane [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Cytoplasm (By similarity). Note=Mainly cytoplasmic under aerobic conditions, and found in the inner membrane under anaerobic conditions (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=129, Percent_Identity=34.1085271317829, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 23279; Mature: 23148

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEQTATTCREDSYRLLAACYYSPSQALLEENCCISLAGLLSDMVPDAAASAAEAAELLH
CCCCHHHHHHHCHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
KISLDELVVEHSRLFMGPFKLVAPPYGSVWLDEQKSVMGDSTAKVAAFYHANGLHLADDF
HHHHHHHHHHHHHHHHCCHHHCCCCCCCEEECCHHHHHCCCHHHHHHEEECCCCCCHHHH
HELPDHFAVELEFMSYMAFKQREAAAAGDTPEADRLRDLQRQFLGTFLLPWLGPFTDTII
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDAEAPFYQAIARCTAAFVTADARNLNAAAHV
HCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
PEQTATTCREDSYRLLAACYYSPSQALLEENCCISLAGLLSDMVPDAAASAAEAAELLH
CCCHHHHHHHCHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
KISLDELVVEHSRLFMGPFKLVAPPYGSVWLDEQKSVMGDSTAKVAAFYHANGLHLADDF
HHHHHHHHHHHHHHHHCCHHHCCCCCCCEEECCHHHHHCCCHHHHHHEEECCCCCCHHHH
HELPDHFAVELEFMSYMAFKQREAAAAGDTPEADRLRDLQRQFLGTFLLPWLGPFTDTII
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDAEAPFYQAIARCTAAFVTADARNLNAAAHV
HCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]