Click here to switch to the map view.

The map label for this gene is fccA [H]

Identifier: 189424069

GI number: 189424069

Start: 1041427

End: 1042995

Strand: Reverse

Name: fccA [H]

Synonym: Glov_1003

Alternate gene names: 189424069

Gene position: 1042995-1041427 (Counterclockwise)

Preceding gene: 189424070

Following gene: 189424068

Centisome position: 26.62

GC content: 53.6

Gene sequence:

>1569_bases
ATGATCGATACACTAATACTTCAAAAGGTGTCTAAAAAGACCATCAGAAACGTAATGCTCTTTGCCATCATGCTGGTCAT
GGTTTCTCCGACCGTTATTCTGGCAGCAGAAAAAGGACAACAGCATGATGCCATCGTGGTCGGTGCCGGCATAGCGGGAC
TTTCTGCCAGCTGGGAACTGGCGCAGAAAGGTTTTGATGTTGCCGTCATTGAGATGCAACCTCTCTATGGCGGGACCGCG
ACGATGAGCGAGGGGGCACTCTGCATCGTAGGCACACCGGAGCAGGCGAAGGCCGGCATCATTGATTCACCGCAGATCGC
CTTTAAAGATTTCATGACCTATGGTAGTGATCAGGGCGGTCCCGGTCCCGATGTCGAATGGGTGCGCTACTACACCAACA
AGTCTCGCCATGAAATCTACGACTGGCTTACTGGACTGGGCGTCACTTTTGAGAAGAGCGCGGTCCTTATGCCGGGAAAT
AGTGTGCCGCGCTGGCATAAGGTTATCGGCAAGGGAAGAGGACTGGTCGAACCGATCCACCGGGCCTGCAAGCAAAGCAG
CAGGGTAACGTTTTTCTACGGACATAAGGCGCTTTCGTTGATCAGGGGTAAAAGCGGCAGGATTTCAGGCATTCGGGCAC
AACGGCTCAAAGATAACGTATCTATCGATTATCTTGCACCGGTCGTAATACTGGCAACAGGCGGGTTTCAGGGCAATATG
AAGATGGTGCAAAAATATTGGCCTGAAAGACAGCCGTTTCCTGAACGGATACTGAAAGGTGCCGGAATAAACGCCACGGG
CTCAGGCCATGAAATGGCCCAGGCCGTAGGCGCCCGATTGTTCAACATGCAGTACCAGTGGAATTACGCCACCGGGCTGC
AAAGCCCATCCGATATCACCGGTTCGCGAGGGTTGAACGCTTTCAGTCAGCAATCGATCTGGGTCAACAAGGCAGGCTCA
CGTTTCGTAAATGAATCTCAAGACACCAGGATGACATTTCCCGAACTGATCAAACAGCCCGGCGGCACCTACTGGGCGAT
ATTCGACAGTGCGGCCCGCAACAGTTTTTTCATATCCGGCTGGAGCCGGGAGTCAATCGAAGAGGGGCTTTTCAATAATC
AACAAAACAGCAGGTTCGTAAAATCTGCACCGACTATAGCAGAGCTGGCTGTGGCTGCGGGACTTCCCCCGCAGATACTT
ACTGAAACCGTGAATCATTGGAATGCCATGGTAACTGCTGGTAGCGACACTGATTTTGGCCGCATCGGCTGCTGCCGGAC
CCCCTGGTCCAATCCGAACAGGATCGAACGGGCGCCTTTTTACGCCGTACAATTCTACCCGCTGGCACGTAAGAGCATGG
GTGGCGTATCTATCGATCGGTCCTGTCGGGTTTTAGATGACTCGGGAAAGCACATTCCCGGCCTGTATGCCGCTGGCGAA
CTGACCGGCCTCGCCGGTGTCAATGGAAAGGCTTCACTTGAAGGAACATTCCTGGGAACCTCCATCATGACTGGCCGTGT
GGCGGGACGGGCAGCTGCGGCAGAGCTGTCAGGGCAAACAAAACCATAA

Upstream 100 bases:

>100_bases
CACCAAATCAGAAAATTATTGCCTGCAGTGCCACTCTTTTGGCTTCAAAATTCCATGATTTTCAGCACACAACTCTACCG
GTCCAAGGGGTGGCTCACAA

Downstream 100 bases:

>100_bases
TGTTTCGGTTGATCCATCAACAAGAGTCGCTTTAGGCGGTTCAACCTCATGCCCGTTTGCTGAAGACACACACAACCAAC
TAAGCATCGACAGCAGGCTA

Product: fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein

Products: NA

Alternate protein names: Flavocytochrome c; Flavocytochrome c3; Fcc3 [H]

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MIDTLILQKVSKKTIRNVMLFAIMLVMVSPTVILAAEKGQQHDAIVVGAGIAGLSASWELAQKGFDVAVIEMQPLYGGTA
TMSEGALCIVGTPEQAKAGIIDSPQIAFKDFMTYGSDQGGPGPDVEWVRYYTNKSRHEIYDWLTGLGVTFEKSAVLMPGN
SVPRWHKVIGKGRGLVEPIHRACKQSSRVTFFYGHKALSLIRGKSGRISGIRAQRLKDNVSIDYLAPVVILATGGFQGNM
KMVQKYWPERQPFPERILKGAGINATGSGHEMAQAVGARLFNMQYQWNYATGLQSPSDITGSRGLNAFSQQSIWVNKAGS
RFVNESQDTRMTFPELIKQPGGTYWAIFDSAARNSFFISGWSRESIEEGLFNNQQNSRFVKSAPTIAELAVAAGLPPQIL
TETVNHWNAMVTAGSDTDFGRIGCCRTPWSNPNRIERAPFYAVQFYPLARKSMGGVSIDRSCRVLDDSGKHIPGLYAAGE
LTGLAGVNGKASLEGTFLGTSIMTGRVAGRAAAAELSGQTKP

Sequences:

>Translated_522_residues
MIDTLILQKVSKKTIRNVMLFAIMLVMVSPTVILAAEKGQQHDAIVVGAGIAGLSASWELAQKGFDVAVIEMQPLYGGTA
TMSEGALCIVGTPEQAKAGIIDSPQIAFKDFMTYGSDQGGPGPDVEWVRYYTNKSRHEIYDWLTGLGVTFEKSAVLMPGN
SVPRWHKVIGKGRGLVEPIHRACKQSSRVTFFYGHKALSLIRGKSGRISGIRAQRLKDNVSIDYLAPVVILATGGFQGNM
KMVQKYWPERQPFPERILKGAGINATGSGHEMAQAVGARLFNMQYQWNYATGLQSPSDITGSRGLNAFSQQSIWVNKAGS
RFVNESQDTRMTFPELIKQPGGTYWAIFDSAARNSFFISGWSRESIEEGLFNNQQNSRFVKSAPTIAELAVAAGLPPQIL
TETVNHWNAMVTAGSDTDFGRIGCCRTPWSNPNRIERAPFYAVQFYPLARKSMGGVSIDRSCRVLDDSGKHIPGLYAAGE
LTGLAGVNGKASLEGTFLGTSIMTGRVAGRAAAAELSGQTKP
>Mature_522_residues
MIDTLILQKVSKKTIRNVMLFAIMLVMVSPTVILAAEKGQQHDAIVVGAGIAGLSASWELAQKGFDVAVIEMQPLYGGTA
TMSEGALCIVGTPEQAKAGIIDSPQIAFKDFMTYGSDQGGPGPDVEWVRYYTNKSRHEIYDWLTGLGVTFEKSAVLMPGN
SVPRWHKVIGKGRGLVEPIHRACKQSSRVTFFYGHKALSLIRGKSGRISGIRAQRLKDNVSIDYLAPVVILATGGFQGNM
KMVQKYWPERQPFPERILKGAGINATGSGHEMAQAVGARLFNMQYQWNYATGLQSPSDITGSRGLNAFSQQSIWVNKAGS
RFVNESQDTRMTFPELIKQPGGTYWAIFDSAARNSFFISGWSRESIEEGLFNNQQNSRFVKSAPTIAELAVAAGLPPQIL
TETVNHWNAMVTAGSDTDFGRIGCCRTPWSNPNRIERAPFYAVQFYPLARKSMGGVSIDRSCRVLDDSGKHIPGLYAAGE
LTGLAGVNGKASLEGTFLGTSIMTGRVAGRAAAAELSGQTKP

Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71986328, Length=489, Percent_Identity=27.4028629856851, Blast_Score=129, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6322511, Length=536, Percent_Identity=21.6417910447761, Blast_Score=87, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031
- InterPro:   IPR012286
- InterPro:   IPR007087 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 56630; Mature: 56630

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDTLILQKVSKKTIRNVMLFAIMLVMVSPTVILAAEKGQQHDAIVVGAGIAGLSASWEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCCCHHH
AQKGFDVAVIEMQPLYGGTATMSEGALCIVGTPEQAKAGIIDSPQIAFKDFMTYGSDQGG
HHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCHHCCCCCCCCCHHHHHHHHCCCCCCC
PGPDVEWVRYYTNKSRHEIYDWLTGLGVTFEKSAVLMPGNSVPRWHKVIGKGRGLVEPIH
CCCCHHHHEEECCCCHHHHHHHHHCCCCEEECCEEEECCCCCCHHHHHHHCCCCHHHHHH
RACKQSSRVTFFYGHKALSLIRGKSGRISGIRAQRLKDNVSIDYLAPVVILATGGFQGNM
HHHHHCCCEEEEECCHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHCEEEEEEECCCCCCH
KMVQKYWPERQPFPERILKGAGINATGSGHEMAQAVGARLFNMQYQWNYATGLQSPSDIT
HHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEEEEEEHHCCCCCCCCCC
GSRGLNAFSQQSIWVNKAGSRFVNESQDTRMTFPELIKQPGGTYWAIFDSAARNSFFISG
CCCCCCCHHCCCEEEECCCCHHCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCEEEEC
WSRESIEEGLFNNQQNSRFVKSAPTIAELAVAAGLPPQILTETVNHWNAMVTAGSDTDFG
CCHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHCCCCHHHHHHHHHHCEEEEECCCCCCCC
RIGCCRTPWSNPNRIERAPFYAVQFYPLARKSMGGVSIDRSCRVLDDSGKHIPGLYAAGE
CEEECCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCCCCEEEECCCCCCCCCEEECCC
LTGLAGVNGKASLEGTFLGTSIMTGRVAGRAAAAELSGQTKP
CCEECCCCCCCCCCEEEECHHHHHCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MIDTLILQKVSKKTIRNVMLFAIMLVMVSPTVILAAEKGQQHDAIVVGAGIAGLSASWEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCCCHHH
AQKGFDVAVIEMQPLYGGTATMSEGALCIVGTPEQAKAGIIDSPQIAFKDFMTYGSDQGG
HHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCHHCCCCCCCCCHHHHHHHHCCCCCCC
PGPDVEWVRYYTNKSRHEIYDWLTGLGVTFEKSAVLMPGNSVPRWHKVIGKGRGLVEPIH
CCCCHHHHEEECCCCHHHHHHHHHCCCCEEECCEEEECCCCCCHHHHHHHCCCCHHHHHH
RACKQSSRVTFFYGHKALSLIRGKSGRISGIRAQRLKDNVSIDYLAPVVILATGGFQGNM
HHHHHCCCEEEEECCHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHCEEEEEEECCCCCCH
KMVQKYWPERQPFPERILKGAGINATGSGHEMAQAVGARLFNMQYQWNYATGLQSPSDIT
HHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEEEEEEHHCCCCCCCCCC
GSRGLNAFSQQSIWVNKAGSRFVNESQDTRMTFPELIKQPGGTYWAIFDSAARNSFFISG
CCCCCCCHHCCCEEEECCCCHHCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCEEEEC
WSRESIEEGLFNNQQNSRFVKSAPTIAELAVAAGLPPQILTETVNHWNAMVTAGSDTDFG
CCHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHCCCCHHHHHHHHHHCEEEEECCCCCCCC
RIGCCRTPWSNPNRIERAPFYAVQFYPLARKSMGGVSIDRSCRVLDDSGKHIPGLYAAGE
CEEECCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCCCCEEEECCCCCCCCCEEECCC
LTGLAGVNGKASLEGTFLGTSIMTGRVAGRAAAAELSGQTKP
CCEECCCCCCCCCCEEEECHHHHHCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1333793 [H]