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The map label for this gene is ybbD [H]

Identifier: 189423788

GI number: 189423788

Start: 736906

End: 738084

Strand: Reverse

Name: ybbD [H]

Synonym: Glov_0719

Alternate gene names: 189423788

Gene position: 738084-736906 (Counterclockwise)

Preceding gene: 189423789

Following gene: 189423787

Centisome position: 18.84

GC content: 57.85

Gene sequence:

>1179_bases
ATGGAACAGTCCGACCAGTCATCATCAGGCAGCACACCGCTGCCGCCCTGCAGCCGCCGCACCTTTCTGAAAGGTGCCGC
CCTGGCCGGTACGGTGGCCGCCTTCCCGTCCCTGATGGCCGGCTGCGGCAGTTCATCAGGGGATGTTCCATTGGAACAGA
AGATAGCCCAGATGCTGATGGTGGGCTTCCGCGGTCTGACCCTGGATGACAGCAACTACATTGTCCGGGACATCCGCGAC
TACCGTATCGGCGGAACCATCCTCTTTGACCGGGATGCAAAGCTTAAGACCTACGGGCGCAACATCGTTTCGCCGGAGCA
GTTGCAAGGGCTGACGGCCCAGCTGCGCACACTTTCCGCCACCCCGCTCTTCATTGCCGTTGATCAGGAGGGGGGGAAAA
TCGTGCGACTGAAGGAGAGCTACGGCTTTCCCCCCACGGTCTCGGCCCAGCAGCTCGGCACCCTCAATAACCCGGCGGTT
ACCCGGCTGTATGCCGACAGTATCGGTGCCACTCTGGCAACAAACGGGTTGAACATGAACTTTGCACCGGTGGTTGACCT
GAACATCAACCCCCAAAGCCCGGCCATCGGCGCACTGGAGCGCAGTTTTTCCGCAGATCCGTCCATTGTCACCAACCATG
CCCGGATCTTTGTGGAGACCCACGACGCAAACCGGGTCGCCACCTGTTTCAAACATTTCCCCGGCCACGGCAGCGCCACC
GCCGACTCCCATCTGGGGTTTGTGGATGTGACCGATACCTGGTCGGCTGTTGAACTTGAGCCGTACCGGAATCTGATCAA
CGCAGACAAGGCCAGGATGGTGATGACCGCCCATGTCTTTAACCGGCATATTGATCCTGATCTGCCCGCAACCCTCTCAC
AACCGTTCATCACCGGCATACTGCGTGAACAGTTGGGGTTTAACGGGGTGGTGGTAACCGATGACCTGCAGATGCAGGGG
CTGACCCAGTTCTTTGATTACAAGACCATTGTCGAAAAAAGTATCCTGGCCGGGGTGGATATTATCCTGGTTTCCAACAA
CCTGGAGTATGATCCCGAGATCACCCCCACCACCATTAATCATGTGGTTGATCTGGTGAACAGCGGCAGGATATCCGAAC
AACGGATTGATCAGTCCTACCGGCGTATCATGGCACTGAAGGGACGCCTGTTTGCCTGA

Upstream 100 bases:

>100_bases
TTGTTACCGTGGACAAACAGGGCGGTGTCACCGTGGGCTCAAGTACCCCGGCGGGTTTCTTCTAAGCGGCACTATTCTGA
AAGGAACAGACCACAGCATC

Downstream 100 bases:

>100_bases
TATGCACCCGGCTCCGGTTTGAGAAAGGACAACCTATATGCAGGACAGCCGCACCAACCGGATCTACTTCTGTGCCCCGG
TCAACGCCCTGGTGGAAGGG

Product: beta-N-acetylhexosaminidase

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MEQSDQSSSGSTPLPPCSRRTFLKGAALAGTVAAFPSLMAGCGSSSGDVPLEQKIAQMLMVGFRGLTLDDSNYIVRDIRD
YRIGGTILFDRDAKLKTYGRNIVSPEQLQGLTAQLRTLSATPLFIAVDQEGGKIVRLKESYGFPPTVSAQQLGTLNNPAV
TRLYADSIGATLATNGLNMNFAPVVDLNINPQSPAIGALERSFSADPSIVTNHARIFVETHDANRVATCFKHFPGHGSAT
ADSHLGFVDVTDTWSAVELEPYRNLINADKARMVMTAHVFNRHIDPDLPATLSQPFITGILREQLGFNGVVVTDDLQMQG
LTQFFDYKTIVEKSILAGVDIILVSNNLEYDPEITPTTINHVVDLVNSGRISEQRIDQSYRRIMALKGRLFA

Sequences:

>Translated_392_residues
MEQSDQSSSGSTPLPPCSRRTFLKGAALAGTVAAFPSLMAGCGSSSGDVPLEQKIAQMLMVGFRGLTLDDSNYIVRDIRD
YRIGGTILFDRDAKLKTYGRNIVSPEQLQGLTAQLRTLSATPLFIAVDQEGGKIVRLKESYGFPPTVSAQQLGTLNNPAV
TRLYADSIGATLATNGLNMNFAPVVDLNINPQSPAIGALERSFSADPSIVTNHARIFVETHDANRVATCFKHFPGHGSAT
ADSHLGFVDVTDTWSAVELEPYRNLINADKARMVMTAHVFNRHIDPDLPATLSQPFITGILREQLGFNGVVVTDDLQMQG
LTQFFDYKTIVEKSILAGVDIILVSNNLEYDPEITPTTINHVVDLVNSGRISEQRIDQSYRRIMALKGRLFA
>Mature_392_residues
MEQSDQSSSGSTPLPPCSRRTFLKGAALAGTVAAFPSLMAGCGSSSGDVPLEQKIAQMLMVGFRGLTLDDSNYIVRDIRD
YRIGGTILFDRDAKLKTYGRNIVSPEQLQGLTAQLRTLSATPLFIAVDQEGGKIVRLKESYGFPPTVSAQQLGTLNNPAV
TRLYADSIGATLATNGLNMNFAPVVDLNINPQSPAIGALERSFSADPSIVTNHARIFVETHDANRVATCFKHFPGHGSAT
ADSHLGFVDVTDTWSAVELEPYRNLINADKARMVMTAHVFNRHIDPDLPATLSQPFITGILREQLGFNGVVVTDDLQMQG
LTQFFDYKTIVEKSILAGVDIILVSNNLEYDPEITPTTINHVVDLVNSGRISEQRIDQSYRRIMALKGRLFA

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=316, Percent_Identity=33.8607594936709, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1788453, Length=350, Percent_Identity=22.2857142857143, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 42701; Mature: 42701

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQSDQSSSGSTPLPPCSRRTFLKGAALAGTVAAFPSLMAGCGSSSGDVPLEQKIAQMLM
CCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
VGFRGLTLDDSNYIVRDIRDYRIGGTILFDRDAKLKTYGRNIVSPEQLQGLTAQLRTLSA
HHCCCEEECCCCCEEECHHHEECCCEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCCC
TPLFIAVDQEGGKIVRLKESYGFPPTVSAQQLGTLNNPAVTRLYADSIGATLATNGLNMN
CEEEEEEECCCCEEEEEHHHCCCCCCCCHHHCCCCCCCCEEEEEHHHCCCEEEECCCCCC
FAPVVDLNINPQSPAIGALERSFSADPSIVTNHARIFVETHDANRVATCFKHFPGHGSAT
CCEEEEEECCCCCCCHHHHHHHCCCCCCEEECCEEEEEEECCCCHHHHHHHHCCCCCCCC
ADSHLGFVDVTDTWSAVELEPYRNLINADKARMVMTAHVFNRHIDPDLPATLSQPFITGI
CCCCCCEEEECCCCCEEEEHHHHHHHCCCHHHEEEEHHHHHCCCCCCCCCHHHHHHHHHH
LREQLGFNGVVVTDDLQMQGLTQFFDYKTIVEKSILAGVDIILVSNNLEYDPEITPTTIN
HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHH
HVVDLVNSGRISEQRIDQSYRRIMALKGRLFA
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEQSDQSSSGSTPLPPCSRRTFLKGAALAGTVAAFPSLMAGCGSSSGDVPLEQKIAQMLM
CCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
VGFRGLTLDDSNYIVRDIRDYRIGGTILFDRDAKLKTYGRNIVSPEQLQGLTAQLRTLSA
HHCCCEEECCCCCEEECHHHEECCCEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCCC
TPLFIAVDQEGGKIVRLKESYGFPPTVSAQQLGTLNNPAVTRLYADSIGATLATNGLNMN
CEEEEEEECCCCEEEEEHHHCCCCCCCCHHHCCCCCCCCEEEEEHHHCCCEEEECCCCCC
FAPVVDLNINPQSPAIGALERSFSADPSIVTNHARIFVETHDANRVATCFKHFPGHGSAT
CCEEEEEECCCCCCCHHHHHHHCCCCCCEEECCEEEEEEECCCCHHHHHHHHCCCCCCCC
ADSHLGFVDVTDTWSAVELEPYRNLINADKARMVMTAHVFNRHIDPDLPATLSQPFITGI
CCCCCCEEEECCCCCEEEEHHHHHHHCCCHHHEEEEHHHHHCCCCCCCCCHHHHHHHHHH
LREQLGFNGVVVTDDLQMQGLTQFFDYKTIVEKSILAGVDIILVSNNLEYDPEITPTTIN
HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHH
HVVDLVNSGRISEQRIDQSYRRIMALKGRLFA
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]