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The map label for this gene is yggS [C]

Identifier: 189423531

GI number: 189423531

Start: 431605

End: 432291

Strand: Reverse

Name: yggS [C]

Synonym: Glov_0460

Alternate gene names: 189423531

Gene position: 432291-431605 (Counterclockwise)

Preceding gene: 189423532

Following gene: 189423530

Centisome position: 11.03

GC content: 58.66

Gene sequence:

>687_bases
ATGTCTGTCACCGGTAATCTTGCTGCAGTGCAGGCCCGCATACAACGAGCCTGCACGATCTCGGGCAGAGCCCCTTCCAC
GGTGCGGCTGGTGGCGGTCTCCAAGCTGCATCCGGCAGCGCTGGTTGCCGAGGCTGCCGCTGCCGGGCAGACTGTTTTTG
GAGAAAACTATGTCCAGGAGCTGGTCGACAAGGCAGCTCAACTGGCCCGTCCCGTTGAGTGGCATATGATCGGCCACCTG
CAGAGCAACAAGGTCAAGTACCTGCCCGGCATTGTCAGCATGATCCATACGGTTGACCGCCTGTCACTGGCCCAGGAGAT
TGACCGGCAGTGGCGCGACAAACAGTCTGCAGCTTGTGATATTCTGGTGCAGGTCAATGTCTCGGGGGAGGCCACGAAGT
CAGGCACAACCGCAACTGAGGCTGTTGAGCTGGTCAGACACATTGCCAAATTGCCTAACGTCAGGGTGCGCGGGCTGATG
ACCATGCCGCCTTTTTTTGATGATCCTGAGGCAGCCCGGCCCTATTTCAGAGAGCTGCGGTTGCTGGCAGACCGGATCAG
CAGTGAGCAGATTCCCGCTGTCGAGATGACTGAGCTTTCTATGGGGATGTCCGGCGATTTTGAAGTGGCGATTGAGGAAG
GTGCCACCCTGGTACGGGTCGGCACGGCTATTTTTGGTGGACGCTAG

Upstream 100 bases:

>100_bases
AAGCACAGCCCAGGCCCATGCCACCGGTCAGGAGGCGACCGAGCTTGCAAACATGTCCGGCAACCTGGCCAACCTGGTAG
GCCGGTTCAGGGTCTAGCTG

Downstream 100 bases:

>100_bases
GAGTCTACTGCTGGAAAGGAAGGTTTCAATGACACGTCTGGCGCTGTTGGCACTCGCACTGCTGCTGCCAGTATCATCAG
GGGCAGCCACCTATTCCTGG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSVTGNLAAVQARIQRACTISGRAPSTVRLVAVSKLHPAALVAEAAAAGQTVFGENYVQELVDKAAQLARPVEWHMIGHL
QSNKVKYLPGIVSMIHTVDRLSLAQEIDRQWRDKQSAACDILVQVNVSGEATKSGTTATEAVELVRHIAKLPNVRVRGLM
TMPPFFDDPEAARPYFRELRLLADRISSEQIPAVEMTELSMGMSGDFEVAIEEGATLVRVGTAIFGGR

Sequences:

>Translated_228_residues
MSVTGNLAAVQARIQRACTISGRAPSTVRLVAVSKLHPAALVAEAAAAGQTVFGENYVQELVDKAAQLARPVEWHMIGHL
QSNKVKYLPGIVSMIHTVDRLSLAQEIDRQWRDKQSAACDILVQVNVSGEATKSGTTATEAVELVRHIAKLPNVRVRGLM
TMPPFFDDPEAARPYFRELRLLADRISSEQIPAVEMTELSMGMSGDFEVAIEEGATLVRVGTAIFGGR
>Mature_227_residues
SVTGNLAAVQARIQRACTISGRAPSTVRLVAVSKLHPAALVAEAAAAGQTVFGENYVQELVDKAAQLARPVEWHMIGHLQ
SNKVKYLPGIVSMIHTVDRLSLAQEIDRQWRDKQSAACDILVQVNVSGEATKSGTTATEAVELVRHIAKLPNVRVRGLMT
MPPFFDDPEAARPYFRELRLLADRISSEQIPAVEMTELSMGMSGDFEVAIEEGATLVRVGTAIFGGR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=236, Percent_Identity=42.7966101694915, Blast_Score=161, Evalue=5e-40,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=41.8803418803419, Blast_Score=164, Evalue=7e-42,
Organism=Caenorhabditis elegans, GI17533025, Length=218, Percent_Identity=39.4495412844037, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=35.8490566037736, Blast_Score=108, Evalue=7e-25,
Organism=Drosophila melanogaster, GI45550861, Length=238, Percent_Identity=39.4957983193277, Blast_Score=144, Evalue=7e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24719; Mature: 24588

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTGNLAAVQARIQRACTISGRAPSTVRLVAVSKLHPAALVAEAAAAGQTVFGENYVQE
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHH
LVDKAAQLARPVEWHMIGHLQSNKVKYLPGIVSMIHTVDRLSLAQEIDRQWRDKQSAACD
HHHHHHHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
ILVQVNVSGEATKSGTTATEAVELVRHIAKLPNVRVRGLMTMPPFFDDPEAARPYFRELR
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
LLADRISSEQIPAVEMTELSMGMSGDFEVAIEEGATLVRVGTAIFGGR
HHHHHHCCCCCCCEEHHHHHCCCCCCEEEEECCCCEEEEEHHHHHCCC
>Mature Secondary Structure 
SVTGNLAAVQARIQRACTISGRAPSTVRLVAVSKLHPAALVAEAAAAGQTVFGENYVQE
CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHH
LVDKAAQLARPVEWHMIGHLQSNKVKYLPGIVSMIHTVDRLSLAQEIDRQWRDKQSAACD
HHHHHHHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
ILVQVNVSGEATKSGTTATEAVELVRHIAKLPNVRVRGLMTMPPFFDDPEAARPYFRELR
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
LLADRISSEQIPAVEMTELSMGMSGDFEVAIEEGATLVRVGTAIFGGR
HHHHHHCCCCCCCEEHHHHHCCCCCCEEEEECCCCEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]