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The map label for this gene is araH [H]

Identifier: 189354064

GI number: 189354064

Start: 2396446

End: 2397465

Strand: Reverse

Name: araH [H]

Synonym: BMULJ_05317

Alternate gene names: 189354064

Gene position: 2397465-2396446 (Counterclockwise)

Preceding gene: 189354065

Following gene: 189354063

Centisome position: 96.94

GC content: 66.96

Gene sequence:

>1020_bases
ATGAGCCAGGCGATGCAACCCCAACAGACTTCCCCGTCCCCCGACGCGGCCGCCGTCCCCGTACGCCCACGCGGCGGCGT
GTGGCAACTGATCAACCGCTCCGGCATCGTGATGGTGTTCGCCGTGCTGTTCGCGACGCTGTCGCTGACCGTGCCGGACT
TCCTCACGCCGCGCAACATCCAGGGCCTGCTGCTGTCGGTCACGCTGATCGGCTCGATCGCCGTGACGATGATGTTCGTG
CTCGCGCTCGGCGAGGTCGACCTGTCGGTCGCGTCGATCGTCGCGTTCTCGGGCGTCGTCGCCTCGACGCTGATCACGGC
GACGCACAGCGTCGTGCTCGGCATCGCGGCCGGCGTGCTCGCGGGCGGCGCCGTCGGCCTCGTCAACGGCGTGCTGATCG
CGCGCTGGCGCATCAACTCGCTGATCGTCACGCTCGCGATGATGGAGGTCGTGCGCGGCCTCGCGTTCATCACGTCGAAC
GGCGACGCGGTGATGATCTCCGAGGAGCGCTTCTTCGATCTCGGCGGCGGCTCGTTCCTCGGCATCTCGTATCCGATCTG
GAGCAACATCGTCGGCTTCGTCGTGTTCGGCTTCCTGCTGCGCAAGACGGTGTTCGGCAAGAACGTGCTCGCGGTCGGCG
GCAACGGCGAGGCCGCGCTGCTCGCGGGGCTGCCGGTGATGCGGATCAAGATCACCGTGTTCGTGCTGCAAGGGCTCGTG
ACCGGCTTTGCGGGCGTGATGCTCGCGTCGCGGATGAGCCTCGGCGATCCGAAGACCTCGGTCGGCCTCGAGCTCGGCGT
GATCTCCGCGTGCGTGCTCGGCGGCGTGTCGCTGACGGGCGGCGTCGCGACGATTTCCGGCGTGCTCGTCGGCGTGCTGA
TCATGGGCTCGGTGCAGGACGCGATGAGCCTGCTGAACGTGCCGACCTTTTACCAATATCTGATACGCGGCGGAATTCTG
TTGCTCGCGGTGCTGTTCGACCAGTATCGTCGCAACCAGCGGCGCGCGATGAAGATCTGA

Upstream 100 bases:

>100_bases
GGCCAAGTCGCGAAGGCGCAGGCGACGCCCGATACGCTGATCAAGCTCGCGCTGCCGCGCTGACGGATGCGCGAACGCGT
GACAAACGGAATGCAATGAC

Downstream 100 bases:

>100_bases
GCGTGCGCGCCGCCTGAGCATCGATTATCGGGAGACGGCATGCAACAGAATCGACCGGCCGCGGCGGCTTCGCTGCTGGC
CGACTGCCGCAACGCGCTCG

Product: L-arabinose transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSQAMQPQQTSPSPDAAAVPVRPRGGVWQLINRSGIVMVFAVLFATLSLTVPDFLTPRNIQGLLLSVTLIGSIAVTMMFV
LALGEVDLSVASIVAFSGVVASTLITATHSVVLGIAAGVLAGGAVGLVNGVLIARWRINSLIVTLAMMEVVRGLAFITSN
GDAVMISEERFFDLGGGSFLGISYPIWSNIVGFVVFGFLLRKTVFGKNVLAVGGNGEAALLAGLPVMRIKITVFVLQGLV
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATISGVLVGVLIMGSVQDAMSLLNVPTFYQYLIRGGIL
LLAVLFDQYRRNQRRAMKI

Sequences:

>Translated_339_residues
MSQAMQPQQTSPSPDAAAVPVRPRGGVWQLINRSGIVMVFAVLFATLSLTVPDFLTPRNIQGLLLSVTLIGSIAVTMMFV
LALGEVDLSVASIVAFSGVVASTLITATHSVVLGIAAGVLAGGAVGLVNGVLIARWRINSLIVTLAMMEVVRGLAFITSN
GDAVMISEERFFDLGGGSFLGISYPIWSNIVGFVVFGFLLRKTVFGKNVLAVGGNGEAALLAGLPVMRIKITVFVLQGLV
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATISGVLVGVLIMGSVQDAMSLLNVPTFYQYLIRGGIL
LLAVLFDQYRRNQRRAMKI
>Mature_338_residues
SQAMQPQQTSPSPDAAAVPVRPRGGVWQLINRSGIVMVFAVLFATLSLTVPDFLTPRNIQGLLLSVTLIGSIAVTMMFVL
ALGEVDLSVASIVAFSGVVASTLITATHSVVLGIAAGVLAGGAVGLVNGVLIARWRINSLIVTLAMMEVVRGLAFITSNG
DAVMISEERFFDLGGGSFLGISYPIWSNIVGFVVFGFLLRKTVFGKNVLAVGGNGEAALLAGLPVMRIKITVFVLQGLVT
GFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATISGVLVGVLIMGSVQDAMSLLNVPTFYQYLIRGGILL
LAVLFDQYRRNQRRAMKI

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=311, Percent_Identity=52.411575562701, Blast_Score=304, Evalue=7e-84,
Organism=Escherichia coli, GI1788896, Length=314, Percent_Identity=35.031847133758, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=35.0649350649351, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=44.8529411764706, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=29.7658862876254, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787793, Length=256, Percent_Identity=31.640625, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082395, Length=283, Percent_Identity=32.8621908127208, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788471, Length=270, Percent_Identity=32.2222222222222, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693214, Length=237, Percent_Identity=31.6455696202532, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787794, Length=282, Percent_Identity=27.3049645390071, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35357; Mature: 35226

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQAMQPQQTSPSPDAAAVPVRPRGGVWQLINRSGIVMVFAVLFATLSLTVPDFLTPRNI
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
QGLLLSVTLIGSIAVTMMFVLALGEVDLSVASIVAFSGVVASTLITATHSVVLGIAAGVL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGGAVGLVNGVLIARWRINSLIVTLAMMEVVRGLAFITSNGDAVMISEERFFDLGGGSFL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCEEECCCCCEE
GISYPIWSNIVGFVVFGFLLRKTVFGKNVLAVGGNGEAALLAGLPVMRIKITVFVLQGLV
EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATISGVLVGVLIMGSVQD
HHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHH
AMSLLNVPTFYQYLIRGGILLLAVLFDQYRRNQRRAMKI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQAMQPQQTSPSPDAAAVPVRPRGGVWQLINRSGIVMVFAVLFATLSLTVPDFLTPRNI
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
QGLLLSVTLIGSIAVTMMFVLALGEVDLSVASIVAFSGVVASTLITATHSVVLGIAAGVL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGGAVGLVNGVLIARWRINSLIVTLAMMEVVRGLAFITSNGDAVMISEERFFDLGGGSFL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCEEECCCCCEE
GISYPIWSNIVGFVVFGFLLRKTVFGKNVLAVGGNGEAALLAGLPVMRIKITVFVLQGLV
EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATISGVLVGVLIMGSVQD
HHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHH
AMSLLNVPTFYQYLIRGGILLLAVLFDQYRRNQRRAMKI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]