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The map label for this gene is kdgR [H]

Identifier: 189353990

GI number: 189353990

Start: 2314008

End: 2314829

Strand: Direct

Name: kdgR [H]

Synonym: BMULJ_05243

Alternate gene names: 189353990

Gene position: 2314008-2314829 (Clockwise)

Preceding gene: 189353988

Following gene: 189353991

Centisome position: 93.56

GC content: 67.52

Gene sequence:

>822_bases
ATGCAAACGAACAACGACCTGCTTCCCGGTAGCGACGCACGGGAATCGTTGCGGGCACTCGACCGCTATCGCGCGCCCGC
GCTCGACAAGGGGCTCGATATTCTCGAGCTTTTGTCCGAACAAAAGGAAGGCCTCACGCGGACCGAGATCACGAAGGAGC
TCGGCCGCAACGCGAGCGAGATCTACCGGATGCTCGAACGCCTCGTCGCGCGCCGCTACGTGATGCGCTCGCCGGGCGGC
GATCGCTATACGCTGAGCCTGAAGCTGTTCGCGCTCGCACATCGCCATCCGCCGATGAACCGGCTGATCGCGGAGGCGCT
GCCGCCGATGCAGCGCTTCGCCGATGCGGCCGAGCAATCGTGTCATCTCTCCGTCTACGACCGCGGCAGCCTGCTCGTCA
TCGCGCAGGTCGACGGGCCGGGCTCGTGGGGCGTGTCGGTGCGGCTCGGCTCGCGCGTCGGGCTCGCCGATACCGCATCG
GGCAGCGTGATGCTCGCGTTCCAGAGCGCCGAGCACCGCGCGCACATGCTGGCCGAGCACCGGAAGGTGCAGGGCGAAGC
GCCGCTGAACGAAGCGGAGCTCGCGAGTGCGTGCGAGTCGATCCGGCAGGCCGGTTTCCTGCAACAGGACAGCCGGCAGG
CATACGGCGTAACCGATCTGAGCGCGCCGCTGCTCGGCCCGTCGGGACAGGCGATCGCCGTGCTGACCTGTCCGTACATG
CGCCGGATCGACGCGCATGCGGCGCCGCCGATCGACGAGGTGGTCGAACGACTGCGCGATACGGCGCGCAATCTGTCGAT
GTATCGCACGGAGACTTGCTGA

Upstream 100 bases:

>100_bases
TACGCGAATTGTTTCATCGCGTTCGTCGGCGCCTGCGGGTCGCGTTGCCGCGTACGTCGCCGCCGATCGTCGGCAACTCT
CGAACGACATGTCCACCACA

Downstream 100 bases:

>100_bases
CGAGGTCTCGCGGCCGACGTGCGGCCGTGGTGCGGCCGACGTGCGACCGTCGTCGGTCCGGCGACGCGGCAAGCGGCTCC
GGCGAGCGCGGCCGGCATCT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MQTNNDLLPGSDARESLRALDRYRAPALDKGLDILELLSEQKEGLTRTEITKELGRNASEIYRMLERLVARRYVMRSPGG
DRYTLSLKLFALAHRHPPMNRLIAEALPPMQRFADAAEQSCHLSVYDRGSLLVIAQVDGPGSWGVSVRLGSRVGLADTAS
GSVMLAFQSAEHRAHMLAEHRKVQGEAPLNEAELASACESIRQAGFLQQDSRQAYGVTDLSAPLLGPSGQAIAVLTCPYM
RRIDAHAAPPIDEVVERLRDTARNLSMYRTETC

Sequences:

>Translated_273_residues
MQTNNDLLPGSDARESLRALDRYRAPALDKGLDILELLSEQKEGLTRTEITKELGRNASEIYRMLERLVARRYVMRSPGG
DRYTLSLKLFALAHRHPPMNRLIAEALPPMQRFADAAEQSCHLSVYDRGSLLVIAQVDGPGSWGVSVRLGSRVGLADTAS
GSVMLAFQSAEHRAHMLAEHRKVQGEAPLNEAELASACESIRQAGFLQQDSRQAYGVTDLSAPLLGPSGQAIAVLTCPYM
RRIDAHAAPPIDEVVERLRDTARNLSMYRTETC
>Mature_273_residues
MQTNNDLLPGSDARESLRALDRYRAPALDKGLDILELLSEQKEGLTRTEITKELGRNASEIYRMLERLVARRYVMRSPGG
DRYTLSLKLFALAHRHPPMNRLIAEALPPMQRFADAAEQSCHLSVYDRGSLLVIAQVDGPGSWGVSVRLGSRVGLADTAS
GSVMLAFQSAEHRAHMLAEHRKVQGEAPLNEAELASACESIRQAGFLQQDSRQAYGVTDLSAPLLGPSGQAIAVLTCPYM
RRIDAHAAPPIDEVVERLRDTARNLSMYRTETC

Specific function: Transcriptional repressor of genes involved in pectinolysis and in pectinase secretion. Controls all the genes involved in pectin catabolism, including the pel genes encoding pectate lyases, kdgT which encodes the 2-keto-3-deoxygluconate transport system

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=241, Percent_Identity=25.7261410788382, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 30108; Mature: 30108

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTNNDLLPGSDARESLRALDRYRAPALDKGLDILELLSEQKEGLTRTEITKELGRNASE
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
IYRMLERLVARRYVMRSPGGDRYTLSLKLFALAHRHPPMNRLIAEALPPMQRFADAAEQS
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHCCHHHHHHHHHHCC
CHLSVYDRGSLLVIAQVDGPGSWGVSVRLGSRVGLADTASGSVMLAFQSAEHRAHMLAEH
CEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHH
RKVQGEAPLNEAELASACESIRQAGFLQQDSRQAYGVTDLSAPLLGPSGQAIAVLTCPYM
HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHH
RRIDAHAAPPIDEVVERLRDTARNLSMYRTETC
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQTNNDLLPGSDARESLRALDRYRAPALDKGLDILELLSEQKEGLTRTEITKELGRNASE
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
IYRMLERLVARRYVMRSPGGDRYTLSLKLFALAHRHPPMNRLIAEALPPMQRFADAAEQS
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHCCHHHHHHHHHHCC
CHLSVYDRGSLLVIAQVDGPGSWGVSVRLGSRVGLADTASGSVMLAFQSAEHRAHMLAEH
CEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHH
RKVQGEAPLNEAELASACESIRQAGFLQQDSRQAYGVTDLSAPLLGPSGQAIAVLTCPYM
HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHH
RRIDAHAAPPIDEVVERLRDTARNLSMYRTETC
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840643; 1545709 [H]