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The map label for this gene is allS [H]

Identifier: 189353893

GI number: 189353893

Start: 2201066

End: 2201956

Strand: Direct

Name: allS [H]

Synonym: BMULJ_05145

Alternate gene names: 189353893

Gene position: 2201066-2201956 (Clockwise)

Preceding gene: 189353891

Following gene: 189353895

Centisome position: 89.0

GC content: 70.15

Gene sequence:

>891_bases
ATGCTGACCAGCGACCACATCGACATGCTGCTGACCGTCATCGACAAGGGTTCATTCTCGGCGGCCGCGCGCGCACTCGG
CCGCACGCCGTCGGCGGTCAGCATGGCCATCGCGAATCTCGAGGCCGAGCTGGGCCTCGTGCTGTTCGACCGCGGCACGC
GCGAACCGACACCGACGGCCGCAATGGCCGCGCTGCTGCCCGACGCGCGCGCGATTGCCGAGCGGCTGCACGCGCTGCGC
GCGCATGCACAGCATCTGTCGGAAGGCGTCGAGGACACGCTGCGGCTCGGTCTCGCGGCGGAGGTCGACGACGCGCCCGT
CGCACGCGCGCTCGCGGCCGTTTCCGCGACATATCCGGCGCTCGCGATCAGCATCGTCACGGCGCCGCAGGACGTGATCG
TCGATGCGCTGCATCGCGGCGCCGTCGATCTGTGCGTCGCGTACGGCGGGCTCGATCTTCATCCGCAAGAACAGATCCAC
GCGCTGTGGACCGAGACGCTCGTCGCGGTCGCCGCGCCGACGCATCCACTGATCGCGGAAGCCGCGCACCCCGAAGGAAT
CGAGCGACTGTCGGGGTTCCGGCAGATCGTGATCGCCGATCCGGACCGACCGCTGACCGACGTACGGCCCGTGATCGGCA
ACCGCACGTGGAAAGTGACCGACATGGCAACCGCGATCGCGCTCGTGACGGCCGGCCACGGCTGGGCGAACCTGCCGGCG
TCGATGATCGGCCGATACGTCGCCGCCGGGGAACTCGTGCCGCTCACGTTCGCGAACATCCGCAACGGCTTGCCGCTGCC
CGTGTATCTGCGGCGGCCGAAGCATACGGGGCTCGGCAAGGCCGCGAACGAGCTGGTGCGGGCGCTGCGTGCCGACGGCG
ACGCGGCGTAA

Upstream 100 bases:

>100_bases
TGAATCGCTCCCTTCGAATCGAACAAGGTGGCGAGACTAGCAGCGCGTCCCCTGCCTGCAAAAGTCAGGTACTTTCAATT
TTTCTGACAGGAGGCATCGC

Downstream 100 bases:

>100_bases
CCGCAGCACGCGCTACCGCGCGCGCCTGACCGCCCGCTTCCGCGCGGCGTCCCTGGTCCGGCCGCCGCCATTCGCCGCCG
CGAACATCTTCATGTCGCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MLTSDHIDMLLTVIDKGSFSAAARALGRTPSAVSMAIANLEAELGLVLFDRGTREPTPTAAMAALLPDARAIAERLHALR
AHAQHLSEGVEDTLRLGLAAEVDDAPVARALAAVSATYPALAISIVTAPQDVIVDALHRGAVDLCVAYGGLDLHPQEQIH
ALWTETLVAVAAPTHPLIAEAAHPEGIERLSGFRQIVIADPDRPLTDVRPVIGNRTWKVTDMATAIALVTAGHGWANLPA
SMIGRYVAAGELVPLTFANIRNGLPLPVYLRRPKHTGLGKAANELVRALRADGDAA

Sequences:

>Translated_296_residues
MLTSDHIDMLLTVIDKGSFSAAARALGRTPSAVSMAIANLEAELGLVLFDRGTREPTPTAAMAALLPDARAIAERLHALR
AHAQHLSEGVEDTLRLGLAAEVDDAPVARALAAVSATYPALAISIVTAPQDVIVDALHRGAVDLCVAYGGLDLHPQEQIH
ALWTETLVAVAAPTHPLIAEAAHPEGIERLSGFRQIVIADPDRPLTDVRPVIGNRTWKVTDMATAIALVTAGHGWANLPA
SMIGRYVAAGELVPLTFANIRNGLPLPVYLRRPKHTGLGKAANELVRALRADGDAA
>Mature_296_residues
MLTSDHIDMLLTVIDKGSFSAAARALGRTPSAVSMAIANLEAELGLVLFDRGTREPTPTAAMAALLPDARAIAERLHALR
AHAQHLSEGVEDTLRLGLAAEVDDAPVARALAAVSATYPALAISIVTAPQDVIVDALHRGAVDLCVAYGGLDLHPQEQIH
ALWTETLVAVAAPTHPLIAEAAHPEGIERLSGFRQIVIADPDRPLTDVRPVIGNRTWKVTDMATAIALVTAGHGWANLPA
SMIGRYVAAGELVPLTFANIRNGLPLPVYLRRPKHTGLGKAANELVRALRADGDAA

Specific function: Positive regulator essential for the expression of AllD operon. Binds to the AllD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=290, Percent_Identity=28.9655172413793, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789492, Length=258, Percent_Identity=29.4573643410853, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082024, Length=267, Percent_Identity=28.0898876404494, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786401, Length=264, Percent_Identity=26.5151515151515, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786508, Length=304, Percent_Identity=24.3421052631579, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=176, Percent_Identity=29.5454545454545, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787949, Length=262, Percent_Identity=24.0458015267176, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31179; Mature: 31179

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTSDHIDMLLTVIDKGSFSAAARALGRTPSAVSMAIANLEAELGLVLFDRGTREPTPTA
CCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHH
AMAALLPDARAIAERLHALRAHAQHLSEGVEDTLRLGLAAEVDDAPVARALAAVSATYPA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHH
LAISIVTAPQDVIVDALHRGAVDLCVAYGGLDLHPQEQIHALWTETLVAVAAPTHPLIAE
HEEEEEECCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHC
AAHPEGIERLSGFRQIVIADPDRPLTDVRPVIGNRTWKVTDMATAIALVTAGHGWANLPA
CCCCHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCH
SMIGRYVAAGELVPLTFANIRNGLPLPVYLRRPKHTGLGKAANELVRALRADGDAA
HHHHHHHHCCCEEEEEHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLTSDHIDMLLTVIDKGSFSAAARALGRTPSAVSMAIANLEAELGLVLFDRGTREPTPTA
CCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHH
AMAALLPDARAIAERLHALRAHAQHLSEGVEDTLRLGLAAEVDDAPVARALAAVSATYPA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHH
LAISIVTAPQDVIVDALHRGAVDLCVAYGGLDLHPQEQIHALWTETLVAVAAPTHPLIAE
HEEEEEECCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHC
AAHPEGIERLSGFRQIVIADPDRPLTDVRPVIGNRTWKVTDMATAIALVTAGHGWANLPA
CCCCHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCH
SMIGRYVAAGELVPLTFANIRNGLPLPVYLRRPKHTGLGKAANELVRALRADGDAA
HHHHHHHHCCCEEEEEHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]