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The map label for this gene is yjcC [C]

Identifier: 189353798

GI number: 189353798

Start: 2088489

End: 2089304

Strand: Reverse

Name: yjcC [C]

Synonym: BMULJ_05045

Alternate gene names: 189353798

Gene position: 2089304-2088489 (Counterclockwise)

Preceding gene: 189353799

Following gene: 189353797

Centisome position: 84.48

GC content: 66.18

Gene sequence:

>816_bases
ATGAATGCGGTCGAACCTCGCCTGATGGCGGACAGGGAACAGAATCGGGAAGCGAGTCGTGACGAAATCGGTAAGGTGTT
CGGCGTGCCGGACGGTCCTGTCGACCTCGCTTCGGTACGCAGTTTCGTAGAAAGCCGGCTTGAATTCGTGTACGAGCCGG
TGTGCCGCGCCGACCTGTCGGGCGGCGTGCTGTATGACGAATGTCTCGCGCGGCTGCGGCGCGACGCGCGCGGCGCGTGG
CCGCCGATCGCCTTTTTGCCGCGCCTCGAATCGCTCGGGCTGATGCGCTGGTTCGACCGGCTGGTCGTGAACCGCACGAT
CGATCAGCTGCGCGCCGATCCGACGGCCGTCTACGGCTGCAACATGTCCGCCGCCAGCGCGGTGATGGACGACGCGTGGC
GGCCGATCTTCGCGCGGCTCGAACGCGAGCCGTCCGTCGCCGCGCGGCTCGTCGTCGAAATCACCGAGACCGGGCCGCTG
AATCCCGTCGCGGGCCGCACGTTCGTGGCGCGGTTCCGGCAGGCCGGATGCCGCATCGCGATCGACGACTTCGGAATCGG
CTTCAGTGCCTTGAACAATCTGGCGGTCGGCAACCCGGACATCGTGAAGCTCGACCGCTCGATTCTGCCGATGATCAAGC
GCAACGCGATCGGGCGCTATCAGCTTCGGCGGCTGATCGCGTTTGCGCATGAAGGCGCGCGTCACGTCGTCGTCGAAGGC
GTCGAGACCGAAATGGATCGGCAGATGATCGTGGAGGCCGGCGTCGCATGGGCGCAGGGCATTCGTTTCTCATGGCGTTC
GCCCGCTGCCGCATGA

Upstream 100 bases:

>100_bases
CACGGGATGAGCCGGGTAAGCGGCGGAGCGCAATCGTTGCGCGCCGCGTGTCGCGTCGGGTCGGTCGCCATCGGCGGCCC
ACCATTAGCCGGAGCACCGG

Downstream 100 bases:

>100_bases
CGGCGCACGCACGGTCGCATGGCGTCGCGTGTGCCTGCGCACTGCCGCGCGATCGCAACAGGGGCATCAGCATGGCGGGG
ACGACCCAGGCGGCCACCGA

Product: EAL domain (diguanylate phosphodiesterase) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MNAVEPRLMADREQNREASRDEIGKVFGVPDGPVDLASVRSFVESRLEFVYEPVCRADLSGGVLYDECLARLRRDARGAW
PPIAFLPRLESLGLMRWFDRLVVNRTIDQLRADPTAVYGCNMSAASAVMDDAWRPIFARLEREPSVAARLVVEITETGPL
NPVAGRTFVARFRQAGCRIAIDDFGIGFSALNNLAVGNPDIVKLDRSILPMIKRNAIGRYQLRRLIAFAHEGARHVVVEG
VETEMDRQMIVEAGVAWAQGIRFSWRSPAAA

Sequences:

>Translated_271_residues
MNAVEPRLMADREQNREASRDEIGKVFGVPDGPVDLASVRSFVESRLEFVYEPVCRADLSGGVLYDECLARLRRDARGAW
PPIAFLPRLESLGLMRWFDRLVVNRTIDQLRADPTAVYGCNMSAASAVMDDAWRPIFARLEREPSVAARLVVEITETGPL
NPVAGRTFVARFRQAGCRIAIDDFGIGFSALNNLAVGNPDIVKLDRSILPMIKRNAIGRYQLRRLIAFAHEGARHVVVEG
VETEMDRQMIVEAGVAWAQGIRFSWRSPAAA
>Mature_271_residues
MNAVEPRLMADREQNREASRDEIGKVFGVPDGPVDLASVRSFVESRLEFVYEPVCRADLSGGVLYDECLARLRRDARGAW
PPIAFLPRLESLGLMRWFDRLVVNRTIDQLRADPTAVYGCNMSAASAVMDDAWRPIFARLEREPSVAARLVVEITETGPL
NPVAGRTFVARFRQAGCRIAIDDFGIGFSALNNLAVGNPDIVKLDRSILPMIKRNAIGRYQLRRLIAFAHEGARHVVVEG
VETEMDRQMIVEAGVAWAQGIRFSWRSPAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=26.1410788381743, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786507, Length=206, Percent_Identity=27.1844660194175, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788849, Length=204, Percent_Identity=26.9607843137255, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI87081743, Length=222, Percent_Identity=25.6756756756757, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082096, Length=201, Percent_Identity=27.8606965174129, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=240, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081845, Length=270, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI226510982, Length=217, Percent_Identity=27.6497695852535, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788502, Length=203, Percent_Identity=29.5566502463054, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 30180; Mature: 30180

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVEPRLMADREQNREASRDEIGKVFGVPDGPVDLASVRSFVESRLEFVYEPVCRADLS
CCCCCCHHHHCCHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
GGVLYDECLARLRRDARGAWPPIAFLPRLESLGLMRWFDRLVVNRTIDQLRADPTAVYGC
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
NMSAASAVMDDAWRPIFARLEREPSVAARLVVEITETGPLNPVAGRTFVARFRQAGCRIA
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHCCCEEE
IDDFGIGFSALNNLAVGNPDIVKLDRSILPMIKRNAIGRYQLRRLIAFAHEGARHVVVEG
EECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEC
VETEMDRQMIVEAGVAWAQGIRFSWRSPAAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNAVEPRLMADREQNREASRDEIGKVFGVPDGPVDLASVRSFVESRLEFVYEPVCRADLS
CCCCCCHHHHCCHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
GGVLYDECLARLRRDARGAWPPIAFLPRLESLGLMRWFDRLVVNRTIDQLRADPTAVYGC
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
NMSAASAVMDDAWRPIFARLEREPSVAARLVVEITETGPLNPVAGRTFVARFRQAGCRIA
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHCCCEEE
IDDFGIGFSALNNLAVGNPDIVKLDRSILPMIKRNAIGRYQLRRLIAFAHEGARHVVVEG
EECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEC
VETEMDRQMIVEAGVAWAQGIRFSWRSPAAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]