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The map label for this gene is ybfI [H]

Identifier: 189353638

GI number: 189353638

Start: 1899184

End: 1900041

Strand: Direct

Name: ybfI [H]

Synonym: BMULJ_04883

Alternate gene names: 189353638

Gene position: 1899184-1900041 (Clockwise)

Preceding gene: 189353633

Following gene: 189353639

Centisome position: 76.79

GC content: 69.7

Gene sequence:

>858_bases
ATGACGACCACGGCGCACGACATCGGCAGGTCCGATCACTGGCTGGACGCCCGGCGCGATCCCGAAACGGGGATCGAGAG
CCTGCGCGCGCATTTCAGCGGCCATGCCTACGATCCGCACGATCACGACGACATGCTGATCGGCTATACCGAGCAAGGCG
TCCAACGTTTTCAGTGCCATCGGTCGCTACATACGAGCGTGCCGGGCCGCGCGATCCTGATCGAGCCCGGCGCGTTGCAC
GACGGGCATGCGCCGGAACCGGGCGGCTTCACGTACGCGATGCTCTATCTGCCGCAATCGTGGGTCGAACGCGCGGCGCG
TCGGCTCGAGTTGCCGGGCCTCGCCGGCGTCGAAGCCGCGTTCGGGCATACGCTCGTCGACGACCGCGGCCTCGTCGACG
CGATCCGGCACGCGTTCGCCGCCTTGCACGGCAACGAGGGCAAGCTCGCGCGCGACCAGACGCTCGATCGCGTGCTGATG
CACCTGCGCGGGCAGCTGCGCGAGCCGTTCGTGCACGAAGCCGGCGCGGTGCCGCCCGCGATCGCGCGCGTGCGCGATCT
GCTGCATGCGCGAATGGACGCGAACCTCGGTCTCGACGAACTCGCCGAGCTTGCCGGCATCGACCGCTTTCGGCTGACGC
GCCTGTTTCAGCGCGCGTTCGGCACGTCGCCGCATGCGTACCTCGTGCGCGTCCGGCTGCGCACCGCGCGTCGTCTGCTC
GCGGCCGGCCGCACGCCGGCCGAAGCGGCGGCGGATGTCGGCTTCGCCGATCAGAGCCATCTCGGCCGCTGGTTTCGCCG
CGCGTACCGGATCACGCCGGCCGCGTATCGGCGCATGTGCACAAACGTTCCAGACTGA

Upstream 100 bases:

>100_bases
CCAGTTCCGTACCGCGCCGCCGCAGCAACGCGCGCTCGAGCAGCACGACGCGCGCATGCGTACACTATCCGGCAGGCAAC
GACACGTAGCGACACGAGCG

Downstream 100 bases:

>100_bases
GCGCGCGCACCGCCCGATCATGAGCGGCTCAACAAGGAGCCGTTATGTTCGATACCAAAGTGGCGCTGATCGTGCGCGAT
GATCTCGCGGCCTGGCAAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTTTAHDIGRSDHWLDARRDPETGIESLRAHFSGHAYDPHDHDDMLIGYTEQGVQRFQCHRSLHTSVPGRAILIEPGALH
DGHAPEPGGFTYAMLYLPQSWVERAARRLELPGLAGVEAAFGHTLVDDRGLVDAIRHAFAALHGNEGKLARDQTLDRVLM
HLRGQLREPFVHEAGAVPPAIARVRDLLHARMDANLGLDELAELAGIDRFRLTRLFQRAFGTSPHAYLVRVRLRTARRLL
AAGRTPAEAAADVGFADQSHLGRWFRRAYRITPAAYRRMCTNVPD

Sequences:

>Translated_285_residues
MTTTAHDIGRSDHWLDARRDPETGIESLRAHFSGHAYDPHDHDDMLIGYTEQGVQRFQCHRSLHTSVPGRAILIEPGALH
DGHAPEPGGFTYAMLYLPQSWVERAARRLELPGLAGVEAAFGHTLVDDRGLVDAIRHAFAALHGNEGKLARDQTLDRVLM
HLRGQLREPFVHEAGAVPPAIARVRDLLHARMDANLGLDELAELAGIDRFRLTRLFQRAFGTSPHAYLVRVRLRTARRLL
AAGRTPAEAAADVGFADQSHLGRWFRRAYRITPAAYRRMCTNVPD
>Mature_284_residues
TTTAHDIGRSDHWLDARRDPETGIESLRAHFSGHAYDPHDHDDMLIGYTEQGVQRFQCHRSLHTSVPGRAILIEPGALHD
GHAPEPGGFTYAMLYLPQSWVERAARRLELPGLAGVEAAFGHTLVDDRGLVDAIRHAFAALHGNEGKLARDQTLDRVLMH
LRGQLREPFVHEAGAVPPAIARVRDLLHARMDANLGLDELAELAGIDRFRLTRLFQRAFGTSPHAYLVRVRLRTARRLLA
AGRTPAEAAADVGFADQSHLGRWFRRAYRITPAAYRRMCTNVPD

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31825; Mature: 31694

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTAHDIGRSDHWLDARRDPETGIESLRAHFSGHAYDPHDHDDMLIGYTEQGVQRFQCH
CCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHH
RSLHTSVPGRAILIEPGALHDGHAPEPGGFTYAMLYLPQSWVERAARRLELPGLAGVEAA
HHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEHHHCCHHHHHHHHHHCCCCCCCCHHHH
FGHTLVDDRGLVDAIRHAFAALHGNEGKLARDQTLDRVLMHLRGQLREPFVHEAGAVPPA
HCCHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
IARVRDLLHARMDANLGLDELAELAGIDRFRLTRLFQRAFGTSPHAYLVRVRLRTARRLL
HHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AAGRTPAEAAADVGFADQSHLGRWFRRAYRITPAAYRRMCTNVPD
HCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure 
TTTAHDIGRSDHWLDARRDPETGIESLRAHFSGHAYDPHDHDDMLIGYTEQGVQRFQCH
CCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHH
RSLHTSVPGRAILIEPGALHDGHAPEPGGFTYAMLYLPQSWVERAARRLELPGLAGVEAA
HHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEHHHCCHHHHHHHHHHCCCCCCCCHHHH
FGHTLVDDRGLVDAIRHAFAALHGNEGKLARDQTLDRVLMHLRGQLREPFVHEAGAVPPA
HCCHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
IARVRDLLHARMDANLGLDELAELAGIDRFRLTRLFQRAFGTSPHAYLVRVRLRTARRLL
HHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AAGRTPAEAAADVGFADQSHLGRWFRRAYRITPAAYRRMCTNVPD
HCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]