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The map label for this gene is yafC [H]

Identifier: 189353464

GI number: 189353464

Start: 1683070

End: 1683969

Strand: Direct

Name: yafC [H]

Synonym: BMULJ_04708

Alternate gene names: 189353464

Gene position: 1683070-1683969 (Clockwise)

Preceding gene: 189353462

Following gene: 189353466

Centisome position: 68.05

GC content: 71.11

Gene sequence:

>900_bases
ATGACCGCCGATCTGAACTGGGAACGCTATCGCACCTTCCTTGCCGTGTTGACGGAAGGCTCGCTATCCGCTGCCGCGCG
TGCGCTCGGCATCACACAACCGACCGCGGGCCGCCACGTCGCGGCGCTCGAAGCCGCGTTCGGTCAGACGCTGTTCACGC
GCTCGCCTTCCGGCCTGCTGCCGACCGACGCGGCGCTTGCACTGCGCGGTCATGCGGAGGCGCTGCGCAGCGCGGCCGCC
GCGTTCGAGCGCGCGGCGGCGAGCCACGGCGCGGGCGTGCGCGGTACGGTACGGATCTCCGCGAGCGACGTGATCGCGGT
CGAGGTGCTGCCGCCGCTGCTCGCGCAATTGCGGCGCGAGCATCCGGGGCTCGTGATCGAACTGGTGCCGACCGACCGCA
TTCAGGACGTGCTGAATCGCGAAGCCGACATCGCGGTGCGGATGGCATCGCCGTCGCAGGACGCGCTGGTGGCACGGCGC
ATCGGCGAACTCGAAGTCGCGCTGTATGCGCGCGACGACTACCTGGCGCGCTACGGCGCGCCGTCGACGCTCGACGCGCT
CGCACATCACGCGCTGATCGGGTTCGATACGGTCACGCCGTTCGTCCGCTCGGCCGGGCGCGGGCTGCCGTCGTGGACGC
GCGAGGCCTTCGCGCTGCGCACCGACAGCAATCTCGCGCAGCTCGCGATGATCCGGGCCGGCTACGGGATCGGCTTCTGC
CAGAGCCGGCTCGCGCAACGCGACAGCCGGCTCGTGCGCGTGCTGCCGGACGGCCCGGCGGTGAAGCTCGAGACGTGGGT
CGTCATGCACGAAGATTTGCGCGCGAGCCCGCGCTGCCGGGCGGTGTTCGACGCGCTCGCGAATGGATTGCGTGCGTATG
CCGAAGGGACGGGCGAGTAG

Upstream 100 bases:

>100_bases
CCGCCATTGCCGTTCTCCTCGATCGTGACGGCTTGCATTCTGGCCCGTGGCGGGATAGCAAGGAATTGCCGAATATCGGC
CATCGGCTATACATTTATGC

Downstream 100 bases:

>100_bases
GTCGTGTGTTCGCTGTGCGTTCGGTGAGCTTGCGCGCCGGCGAATGCGGGGCTGCGGCGCGCGGGTACGGATTCTTCGGA
GGAGTCGTCAAAGCTCAACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTADLNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTDAALALRGHAEALRSAAA
AFERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRREHPGLVIELVPTDRIQDVLNREADIAVRMASPSQDALVARR
IGELEVALYARDDYLARYGAPSTLDALAHHALIGFDTVTPFVRSAGRGLPSWTREAFALRTDSNLAQLAMIRAGYGIGFC
QSRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRAVFDALANGLRAYAEGTGE

Sequences:

>Translated_299_residues
MTADLNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTDAALALRGHAEALRSAAA
AFERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRREHPGLVIELVPTDRIQDVLNREADIAVRMASPSQDALVARR
IGELEVALYARDDYLARYGAPSTLDALAHHALIGFDTVTPFVRSAGRGLPSWTREAFALRTDSNLAQLAMIRAGYGIGFC
QSRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRAVFDALANGLRAYAEGTGE
>Mature_298_residues
TADLNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTDAALALRGHAEALRSAAAA
FERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRREHPGLVIELVPTDRIQDVLNREADIAVRMASPSQDALVARRI
GELEVALYARDDYLARYGAPSTLDALAHHALIGFDTVTPFVRSAGRGLPSWTREAFALRTDSNLAQLAMIRAGYGIGFCQ
SRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRAVFDALANGLRAYAEGTGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=26.7796610169492, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=26.530612244898, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789639, Length=189, Percent_Identity=28.042328042328, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=32.8767123287671, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787128, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=150, Percent_Identity=30.6666666666667, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32068; Mature: 31937

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADLNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLL
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCC
PTDAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHC
HPGLVIELVPTDRIQDVLNREADIAVRMASPSQDALVARRIGELEVALYARDDYLARYGA
CCCEEEEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCEEEEEEECCHHHHHCCC
PSTLDALAHHALIGFDTVTPFVRSAGRGLPSWTREAFALRTDSNLAQLAMIRAGYGIGFC
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCHHHHHHHHHCCCHHHH
QSRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRAVFDALANGLRAYAEGTGE
HHHHHHCCCCEEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TADLNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLL
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCC
PTDAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHC
HPGLVIELVPTDRIQDVLNREADIAVRMASPSQDALVARRIGELEVALYARDDYLARYGA
CCCEEEEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCEEEEEEECCHHHHHCCC
PSTLDALAHHALIGFDTVTPFVRSAGRGLPSWTREAFALRTDSNLAQLAMIRAGYGIGFC
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCHHHHHHHHHCCCHHHH
QSRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRAVFDALANGLRAYAEGTGE
HHHHHHCCCCEEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]