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The map label for this gene is yhjC [H]

Identifier: 189353226

GI number: 189353226

Start: 1455034

End: 1455945

Strand: Direct

Name: yhjC [H]

Synonym: BMULJ_04464

Alternate gene names: 189353226

Gene position: 1455034-1455945 (Clockwise)

Preceding gene: 189353223

Following gene: 189353228

Centisome position: 58.83

GC content: 68.97

Gene sequence:

>912_bases
ATGGATCATTTGCAAGCAATGCGCATCTTGGCGCGCGTCGCCCATCTCGGCAGCTTCACGAAGGCGGCCGAGCAGCTGCA
ACTGCCGCGTCCGACCGTCAGCAACGCGGTCCAGTATCTGGAAAAACATCTGAAGGTACGGCTGCTGCAGCGGACGACGC
GTCGCGTCGGGCTGACCGTCGAAGGCACGACCTACTACGAGCGCTGCGTGCGGCTGCTCGCCGATCTCGACGACGCGGAA
ACGCTGTTCGAAGAGGCCGGCGCGTCGCCGCGCGGCGTCGTTCGCGTCGATCTGCCCGAGCGTTTCGCGCTGCATCGCGT
GATCCCGGCGCTGCCCGATTTCCACGCGCGCTACCCGGACCTGCGCGTCGTGATCAGCATGACCGACCGCTTCGTCGACC
TCGTCGCGGACGGCATCGACTGCGCGGTGCGCGTCGGCACGCTGTCCGACACGTCGCTGGTCGCGCGGCGCATCGGCGAG
ATGGCGCAGCTCAACTGCGCGTCGCGCGACTATGCGGCGCGCCACGGGCTGCCGCGTACGCCCGACGAACTGCCGGACCA
CGTCGCGGTCGGCTATTTCTCGAGCCGCACGGGCCGCGAACTGGACTGGGAATACACGGACATGGACACCGGGGACGTCC
ACTCGGTGAAAATGCGCAGCATCGTGTCGGTGAACAGCTCGCAGGCGTATCTCGCGTGCTGCGTCGCGGGCCTCGGAATG
ATCCAGGCGCCGCGCGACGGCCTCGAGCCGCTGCTCGCGGACGGCACGCTGGTCGAGGTGCTGCCGGAATGGCAGGCGCC
GCCGCTGCCGGTCGCGGTGGTGTTTCCGCACGGCCGCCATCTGGCGCCGCGCGTGCGGATCTTCGTCGACTGGCTCGCCG
AGACACTCGGCGACGTGAGCCGCGCGACCTGA

Upstream 100 bases:

>100_bases
GACGGAACGCCGCGCGCGATAAACGCGAAACGCGCAACCAAATCATTCGACGCTGATTAACAATGGAGGCTGTCCCAACC
CGCCGGCTTTCGCTCCCCGC

Downstream 100 bases:

>100_bases
CGGGGCCGCGTTACGTGGCTGCCCGTCAGAACTTGTGACGAATCGCGGCGCGCACCGCGAACTGGTTCGACGACGACGAC
GGGCCGTCGGTCCCGACCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDHLQAMRILARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTVEGTTYYERCVRLLADLDDAE
TLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPDLRVVISMTDRFVDLVADGIDCAVRVGTLSDTSLVARRIGE
MAQLNCASRDYAARHGLPRTPDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHSVKMRSIVSVNSSQAYLACCVAGLGM
IQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETLGDVSRAT

Sequences:

>Translated_303_residues
MDHLQAMRILARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTVEGTTYYERCVRLLADLDDAE
TLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPDLRVVISMTDRFVDLVADGIDCAVRVGTLSDTSLVARRIGE
MAQLNCASRDYAARHGLPRTPDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHSVKMRSIVSVNSSQAYLACCVAGLGM
IQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETLGDVSRAT
>Mature_303_residues
MDHLQAMRILARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTVEGTTYYERCVRLLADLDDAE
TLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPDLRVVISMTDRFVDLVADGIDCAVRVGTLSDTSLVARRIGE
MAQLNCASRDYAARHGLPRTPDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHSVKMRSIVSVNSSQAYLACCVAGLGM
IQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETLGDVSRAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=39.261744966443, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=33.3333333333333, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=30.2325581395349, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=26.7605633802817, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=29.4915254237288, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=26.8965517241379, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1787589, Length=282, Percent_Identity=28.0141843971631, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=28.125, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788706, Length=177, Percent_Identity=28.8135593220339, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790011, Length=292, Percent_Identity=23.972602739726, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=109, Percent_Identity=32.1100917431193, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788748, Length=122, Percent_Identity=35.2459016393443, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33627; Mature: 33627

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHLQAMRILARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEE
EGTTYYERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPD
ECCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCHHCCCCC
LRVVISMTDRFVDLVADGIDCAVRVGTLSDTSLVARRIGEMAQLNCASRDYAARHGLPRT
CEEEEHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
PDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHSVKMRSIVSVNSSQAYLACCVAGLGM
HHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCH
IQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETLGDVS
HCCCCHHCCHHHCCCHHEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
RAT
CCC
>Mature Secondary Structure
MDHLQAMRILARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEE
EGTTYYERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPD
ECCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCHHCCCCC
LRVVISMTDRFVDLVADGIDCAVRVGTLSDTSLVARRIGEMAQLNCASRDYAARHGLPRT
CEEEEHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
PDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHSVKMRSIVSVNSSQAYLACCVAGLGM
HHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCH
IQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETLGDVS
HCCCCHHCCHHHCCCHHEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
RAT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]