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The map label for this gene is abgR [H]

Identifier: 189353165

GI number: 189353165

Start: 1382734

End: 1383636

Strand: Reverse

Name: abgR [H]

Synonym: BMULJ_04401

Alternate gene names: 189353165

Gene position: 1383636-1382734 (Counterclockwise)

Preceding gene: 189353168

Following gene: 189353164

Centisome position: 55.95

GC content: 69.44

Gene sequence:

>903_bases
ATGAAATATCACCAGTTGAAAGCGTTCGTCACCGTCGCGGAAGAGGGCAGCATTCGCGCGGCCGCGCGCCGGCTGAACGT
GTCGCCGGCCGCGCTGACGAAGGCCGTCAAGGAGCTGGAGATCGCGCTCGGCGTGTCGCTCGTCGTGCGTACCGCGCGCG
GCGTGCAGCTCACCGCGTTCGGTCAGCAGTTGCAGGTGCGCGCGCGGCTGATCGTCGCCGAGATGCAGCGCGCGCGCGAC
GACATCGAACAGGCGCAAGGCGCGATGACGGGCTCGGTCGCCGCGGCGATCACGCCGGCCGCGGCGGTCACGATCCTGCC
CGACGCGTTTCGCGCGTTTCGCCGGCGCTTTCCGGTCGCGCGCGTGAGTTTCGTCGAAGGATTTCCGGGCGTCGCGCTGC
CGCGGCTGCACGACGGCTCGCTCGATTTCGCGGTGGCCGTCGTCGTGCCCGAACTGCTCGCGGCCGAATTCGATCATGCC
GAGCTGTACGCGAGCCGTTCGCTGATCGTCGCGCGCAAGGAGCATCCGCTCGCGTCGGCGACGTCGCTCGCCGATCTCGT
CGATGCCGACTGGCTGATGAACCCGTCGCCGGAAAGCTCGACGCAGGTGCTGTTCAATTCGTTCGTCGCGTACGGGCTGC
CGGTGCCGACGCGCGTCGTCGAATGTCCGAGCTTCGGTCTCGCGCACAGCCTGATGACGGGCGCCGATCTGCTCGCGTCG
ATGCCCGAGCAGCTGCTCGAGGTCGAATGGGCGCGCGACCGGCTCGCGGTGCTGCCGATCCGCGAGCGTCTGCCGGCCGT
GTCGGTGCAGGTGATCACGCGCCGCGACAGCCCGCTGACACCGGCCGCCGCGATGCTGCTCGACTGTCTGCGCGATTCCG
CGCGTCGCAAGGGATTGCGCTAG

Upstream 100 bases:

>100_bases
GATAAATTGCTTCGGTGCTTACCGCCGGTTGCCGCCGGGAATACCCTGACGCGGCGCGGCCGGACGGGCTTCGGGTTTCC
ACGAATCGCGCGTTGCCGCC

Downstream 100 bases:

>100_bases
GGCGCGATGCGTATGCGGGTTCCACGAACCGGCTGCGACCGCGAGCCGGTATCATGACGGCCGGCCCGCCGTCGCGGCCG
GCCTGCGATTCATCGCCGTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKYHQLKAFVTVAEEGSIRAAARRLNVSPAALTKAVKELEIALGVSLVVRTARGVQLTAFGQQLQVRARLIVAEMQRARD
DIEQAQGAMTGSVAAAITPAAAVTILPDAFRAFRRRFPVARVSFVEGFPGVALPRLHDGSLDFAVAVVVPELLAAEFDHA
ELYASRSLIVARKEHPLASATSLADLVDADWLMNPSPESSTQVLFNSFVAYGLPVPTRVVECPSFGLAHSLMTGADLLAS
MPEQLLEVEWARDRLAVLPIRERLPAVSVQVITRRDSPLTPAAAMLLDCLRDSARRKGLR

Sequences:

>Translated_300_residues
MKYHQLKAFVTVAEEGSIRAAARRLNVSPAALTKAVKELEIALGVSLVVRTARGVQLTAFGQQLQVRARLIVAEMQRARD
DIEQAQGAMTGSVAAAITPAAAVTILPDAFRAFRRRFPVARVSFVEGFPGVALPRLHDGSLDFAVAVVVPELLAAEFDHA
ELYASRSLIVARKEHPLASATSLADLVDADWLMNPSPESSTQVLFNSFVAYGLPVPTRVVECPSFGLAHSLMTGADLLAS
MPEQLLEVEWARDRLAVLPIRERLPAVSVQVITRRDSPLTPAAAMLLDCLRDSARRKGLR
>Mature_300_residues
MKYHQLKAFVTVAEEGSIRAAARRLNVSPAALTKAVKELEIALGVSLVVRTARGVQLTAFGQQLQVRARLIVAEMQRARD
DIEQAQGAMTGSVAAAITPAAAVTILPDAFRAFRRRFPVARVSFVEGFPGVALPRLHDGSLDFAVAVVVPELLAAEFDHA
ELYASRSLIVARKEHPLASATSLADLVDADWLMNPSPESSTQVLFNSFVAYGLPVPTRVVECPSFGLAHSLMTGADLLAS
MPEQLLEVEWARDRLAVLPIRERLPAVSVQVITRRDSPLTPAAAMLLDCLRDSARRKGLR

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=32.6460481099656, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1789506, Length=299, Percent_Identity=25.4180602006689, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081904, Length=298, Percent_Identity=23.8255033557047, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693105, Length=174, Percent_Identity=29.3103448275862, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787806, Length=301, Percent_Identity=25.9136212624585, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790399, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367136, Length=289, Percent_Identity=28.719723183391, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790208, Length=146, Percent_Identity=30.8219178082192, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788887, Length=182, Percent_Identity=29.6703296703297, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=149, Percent_Identity=31.5436241610738, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=32.1917808219178, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=123, Percent_Identity=35.7723577235772, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787949, Length=298, Percent_Identity=26.1744966442953, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787879, Length=214, Percent_Identity=28.5046728971963, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32492; Mature: 32492

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYHQLKAFVTVAEEGSIRAAARRLNVSPAALTKAVKELEIALGVSLVVRTARGVQLTAF
CCCHHEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH
GQQLQVRARLIVAEMQRARDDIEQAQGAMTGSVAAAITPAAAVTILPDAFRAFRRRFPVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHEEECHHHHHHHHHHCCHH
RVSFVEGFPGVALPRLHDGSLDFAVAVVVPELLAAEFDHAELYASRSLIVARKEHPLASA
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEECCCCCHHH
TSLADLVDADWLMNPSPESSTQVLFNSFVAYGLPVPTRVVECPSFGLAHSLMTGADLLAS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHH
MPEQLLEVEWARDRLAVLPIRERLPAVSVQVITRRDSPLTPAAAMLLDCLRDSARRKGLR
HHHHHHHHHHHHCCEEEEEHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYHQLKAFVTVAEEGSIRAAARRLNVSPAALTKAVKELEIALGVSLVVRTARGVQLTAF
CCCHHEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH
GQQLQVRARLIVAEMQRARDDIEQAQGAMTGSVAAAITPAAAVTILPDAFRAFRRRFPVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHEEECHHHHHHHHHHCCHH
RVSFVEGFPGVALPRLHDGSLDFAVAVVVPELLAAEFDHAELYASRSLIVARKEHPLASA
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEECCCCCHHH
TSLADLVDADWLMNPSPESSTQVLFNSFVAYGLPVPTRVVECPSFGLAHSLMTGADLLAS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHH
MPEQLLEVEWARDRLAVLPIRERLPAVSVQVITRRDSPLTPAAAMLLDCLRDSARRKGLR
HHHHHHHHHHHHCCEEEEEHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]