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The map label for this gene is yciR [C]

Identifier: 189353073

GI number: 189353073

Start: 1247463

End: 1249007

Strand: Direct

Name: yciR [C]

Synonym: BMULJ_04307

Alternate gene names: 189353073

Gene position: 1247463-1249007 (Clockwise)

Preceding gene: 189353069

Following gene: 189353074

Centisome position: 50.44

GC content: 71.52

Gene sequence:

>1545_bases
ATGGCAGTCAGGGCACGTCTCCTGCACTCCGTTCTCGCCACTCCCCCGTCCGGCAACCACTGCGTGACGGACGCGCTGCG
TCCGTCGATGCTCGTCACGCTGTTCGAGGACGTGCGGCCGATGGCGCTGTCCGGCCTCGCAAGCGGCTTCGTCGCAGCCG
TCGCGCTGCTTCGTCTGCATGAACTCTGGTGTGCGATCTGGCTCGTCCTCGACGTCGGGCTGCTCGCCGCGCGGCTCGCG
ATCGCGCGCGCCTACGTGGTCGAGCGCGACGCCGGCCGCGATCGCGCCGAATACTGGGCGATGCGCTACGCGCCCGTGTC
GCTGCTCGCCTGCTTCGTGCTCGGCCTCGGCGCGATGGGCTGCGTCGATGCGGCCGACGTCGAGCTCGGCACGCTCGCGG
TGATGATCGCGGGCGGCGTGTTCGGCGGCATCGCGTCGCGCAATTCGGCGCTGCCGCGCCTCGCGATGACGCAGGTCACG
CTCGGCGTGCTGCCGATCGGCGTCGGCGCGCTGCTCGCCGAGCGGCCGGGCGCGTGGCTGCTGGTGCCGCCGCTCGCGAT
CTATCTGGCCGCGATGCGCACCGTCGTGCAACGCCACTACCGCGTACTCGTCGCGCTGATCGCGGCCCGCCAGCGCAATG
CGGAACTCGTCGCGCGCTTCGACGCCGCGCTCACCTACATGCCGCACGGCCTCTGCATGATCGACGGCGACAGCCGCGTG
ATCGTCGCGAACCGGCGCACCGCGCAACTGTTCGGTTCGCCGCGCGACATCATGCTCGATACGCCGCTGCCGGACGTCGT
CGCGGCGCTCGGCACCGATGCCGCGCAGCCCGACGCTGCCGTCCTCGCGGCCCGCTGCGCGGACTGGCTCGCGCACGACG
CGGCGCCGTTCGACATTACGCTCGCGAGCGGCCGGCAGCTCGAACTGACGCGCCATCGCGTGCCGGACGGCAACGCGGTG
ATCATCGTCGAGGACGTGACCGCGCGGCGTCTGACCGAACAGCACATCCGCCACCTCGCACGGCACGATGCGCTGACGGG
GCTGCCGAACCGGCACGAGTTGCATGCGGAGCTCGAACGGATGCTGTCGCGGCCGCCGCGCCGGCCCGACACGGCGGTCG
CGGTGATGTATCTCGATCTCGACGGCTTCAAGGCGATCAACGATCGCTTCGGCCATCAGGCCGGCGACGAGCTGCTCATG
CAGGTCGCCGAACGCCTCGGCCGCGCGTTGCGCGACGGCGCGCTCGCGGCGCGCATCGGCGGCGACGAGTTCGTCGTGGC
CGTCGACGATACGACGATGGACGCGTGCTCGCGCGTCGCCGCGCAGCTCATCGCGCAGATCTCGGCGCCCTACACGCTGT
CGATCGGCGAGACGGTGCGCTTCGGCATCAGCATCGGCATCGCACTCGACGACGGGCACGGCACGCCCGACGAGCTGATC
CGCCAGGCCGACAGCGCGCTCTACGACGCGAAGTCGGCCGGCAAGGGCCGCTATCGGTTCTATTCGAGCGGCAGCCGGCC
CGTCGCGCCGGCCGCCGCAAACTGA

Upstream 100 bases:

>100_bases
CGCGCGTTCATGGTAATGTCGTGCGCATTCCGGCTTGCCGGCACCCGGCCCCGTGCACGGACCTGCCAGCCATCGCGATA
TCGTGTCGAGGTCGACAACC

Downstream 100 bases:

>100_bases
CCGCTCCCGCGCGCGACTGTTTCAGTTTCGAAACGCTTTGTGCGTGCGCGGCGCGTGCCGATGTCACGTGACGTGTTCCG
TAACATCGCCCGCGATACGC

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MAVRARLLHSVLATPPSGNHCVTDALRPSMLVTLFEDVRPMALSGLASGFVAAVALLRLHELWCAIWLVLDVGLLAARLA
IARAYVVERDAGRDRAEYWAMRYAPVSLLACFVLGLGAMGCVDAADVELGTLAVMIAGGVFGGIASRNSALPRLAMTQVT
LGVLPIGVGALLAERPGAWLLVPPLAIYLAAMRTVVQRHYRVLVALIAARQRNAELVARFDAALTYMPHGLCMIDGDSRV
IVANRRTAQLFGSPRDIMLDTPLPDVVAALGTDAAQPDAAVLAARCADWLAHDAAPFDITLASGRQLELTRHRVPDGNAV
IIVEDVTARRLTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYLDLDGFKAINDRFGHQAGDELLM
QVAERLGRALRDGALAARIGGDEFVVAVDDTTMDACSRVAAQLIAQISAPYTLSIGETVRFGISIGIALDDGHGTPDELI
RQADSALYDAKSAGKGRYRFYSSGSRPVAPAAAN

Sequences:

>Translated_514_residues
MAVRARLLHSVLATPPSGNHCVTDALRPSMLVTLFEDVRPMALSGLASGFVAAVALLRLHELWCAIWLVLDVGLLAARLA
IARAYVVERDAGRDRAEYWAMRYAPVSLLACFVLGLGAMGCVDAADVELGTLAVMIAGGVFGGIASRNSALPRLAMTQVT
LGVLPIGVGALLAERPGAWLLVPPLAIYLAAMRTVVQRHYRVLVALIAARQRNAELVARFDAALTYMPHGLCMIDGDSRV
IVANRRTAQLFGSPRDIMLDTPLPDVVAALGTDAAQPDAAVLAARCADWLAHDAAPFDITLASGRQLELTRHRVPDGNAV
IIVEDVTARRLTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYLDLDGFKAINDRFGHQAGDELLM
QVAERLGRALRDGALAARIGGDEFVVAVDDTTMDACSRVAAQLIAQISAPYTLSIGETVRFGISIGIALDDGHGTPDELI
RQADSALYDAKSAGKGRYRFYSSGSRPVAPAAAN
>Mature_513_residues
AVRARLLHSVLATPPSGNHCVTDALRPSMLVTLFEDVRPMALSGLASGFVAAVALLRLHELWCAIWLVLDVGLLAARLAI
ARAYVVERDAGRDRAEYWAMRYAPVSLLACFVLGLGAMGCVDAADVELGTLAVMIAGGVFGGIASRNSALPRLAMTQVTL
GVLPIGVGALLAERPGAWLLVPPLAIYLAAMRTVVQRHYRVLVALIAARQRNAELVARFDAALTYMPHGLCMIDGDSRVI
VANRRTAQLFGSPRDIMLDTPLPDVVAALGTDAAQPDAAVLAARCADWLAHDAAPFDITLASGRQLELTRHRVPDGNAVI
IVEDVTARRLTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYLDLDGFKAINDRFGHQAGDELLMQ
VAERLGRALRDGALAARIGGDEFVVAVDDTTMDACSRVAAQLIAQISAPYTLSIGETVRFGISIGIALDDGHGTPDELIR
QADSALYDAKSAGKGRYRFYSSGSRPVAPAAAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=212, Percent_Identity=33.4905660377358, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=35.6756756756757, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=36.0215053763441, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=32.7683615819209, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=38.1578947368421, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=37.2670807453416, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788956, Length=238, Percent_Identity=29.4117647058824, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=28.7425149700599, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=33.5227272727273, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=31.9767441860465, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=32.9032258064516, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081921, Length=219, Percent_Identity=29.6803652968037, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=29.940119760479, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=30.188679245283, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 55100; Mature: 54969

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVRARLLHSVLATPPSGNHCVTDALRPSMLVTLFEDVRPMALSGLASGFVAAVALLRLH
CCHHHHHHHHHHCCCCCCCCEEHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELWCAIWLVLDVGLLAARLAIARAYVVERDAGRDRAEYWAMRYAPVSLLACFVLGLGAMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
CVDAADVELGTLAVMIAGGVFGGIASRNSALPRLAMTQVTLGVLPIGVGALLAERPGAWL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LVPPLAIYLAAMRTVVQRHYRVLVALIAARQRNAELVARFDAALTYMPHGLCMIDGDSRV
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCEE
IVANRRTAQLFGSPRDIMLDTPLPDVVAALGTDAAQPDAAVLAARCADWLAHDAAPFDIT
EEECCCHHHHCCCCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
LASGRQLELTRHRVPDGNAVIIVEDVTARRLTEQHIRHLARHDALTGLPNRHELHAELER
ECCCCEEEEHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MLSRPPRRPDTAVAVMYLDLDGFKAINDRFGHQAGDELLMQVAERLGRALRDGALAARIG
HHHCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
GDEFVVAVDDTTMDACSRVAAQLIAQISAPYTLSIGETVRFGISIGIALDDGHGTPDELI
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEEEECCCCCHHHHH
RQADSALYDAKSAGKGRYRFYSSGSRPVAPAAAN
HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
AVRARLLHSVLATPPSGNHCVTDALRPSMLVTLFEDVRPMALSGLASGFVAAVALLRLH
CHHHHHHHHHHCCCCCCCCEEHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELWCAIWLVLDVGLLAARLAIARAYVVERDAGRDRAEYWAMRYAPVSLLACFVLGLGAMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
CVDAADVELGTLAVMIAGGVFGGIASRNSALPRLAMTQVTLGVLPIGVGALLAERPGAWL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LVPPLAIYLAAMRTVVQRHYRVLVALIAARQRNAELVARFDAALTYMPHGLCMIDGDSRV
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCEE
IVANRRTAQLFGSPRDIMLDTPLPDVVAALGTDAAQPDAAVLAARCADWLAHDAAPFDIT
EEECCCHHHHCCCCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
LASGRQLELTRHRVPDGNAVIIVEDVTARRLTEQHIRHLARHDALTGLPNRHELHAELER
ECCCCEEEEHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MLSRPPRRPDTAVAVMYLDLDGFKAINDRFGHQAGDELLMQVAERLGRALRDGALAARIG
HHHCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
GDEFVVAVDDTTMDACSRVAAQLIAQISAPYTLSIGETVRFGISIGIALDDGHGTPDELI
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEEEECCCCCHHHHH
RQADSALYDAKSAGKGRYRFYSSGSRPVAPAAAN
HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]