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The map label for this gene is xylH [H]

Identifier: 189353060

GI number: 189353060

Start: 1229858

End: 1231075

Strand: Reverse

Name: xylH [H]

Synonym: BMULJ_04294

Alternate gene names: 189353060

Gene position: 1231075-1229858 (Counterclockwise)

Preceding gene: 189353061

Following gene: 189353049

Centisome position: 49.78

GC content: 69.79

Gene sequence:

>1218_bases
ATGAATACCGAACTGTCTTCCTCTTCGTCTTCCGCCGGCGCGCCGGGCGGTGCGCCGGGTGCCGACGCGCGCCGCGGCGC
GGGCCGGCCGCTGCGGCAGATCTTCGTCCGCTACAAGGTGCTCGCGCTGCTGTTCGCGGTCGCCGCGATCTGGCTGTTCT
TCTCGGTGCTGACCGACGGCGCGTTCGTTACGCCGCGCAACGTGTCGAACCTGCTGCGGCAGATGTCGATCACCGGGATG
CTCGCGTGCGGCATGGTGTTCGTCATCATCGCGGGCGAGATCGACCTGTCGGTCGGTTCGCTGCTCGGGCTGCTCGGCGG
CGTCGCGGCGATTCTCGACGTGAACCGCCACTGGCCCGTGGCCGCGACCGTGCCCGCCGTGCTCGCGCTCGGCGTGCTGA
TCGGGTTGTTCAACGGCTGGTGGTCGACGTATCGACGCGTGCCGTCGTTCATCGTCGGGCTCGGCGGAATGCTCGCGTTT
CGCGGTGTGCTGCTCGGTGTGACCGGCGGTTCGACCATCGCGCCGGTGTCGGACGGCTTCGTGTTCATCGGGCAGGGCTA
TCTGCCGCGCGCCGTCGGCGACGGCCTCGCGCTGCTGCTGTTCGCGCTCGTCGCGCTGCTCGTCGTGCGTCAGCGCGGCA
CGCGGCGCCGCTACCGGCTCGCGGTCGCGCCGGTGTGGCAAGACGCCGCGAAGGTCGTCGGCGCAGGTGCCGTGCTGTTC
GCGTTCGTCGCGACGCTCGACCGTTACGGCGGCATTCCGGTGCCGGTCCTGCTGCTGCTCGCGTTGCTCGGCGTGTTCTC
GTGGATCGCGACGCAGACCGTGTTCGGCCGGCGCATCTATGCGGTCGGATCGAATCTCGAGGCGACGCGGCTGTCCGGCG
TCGACACCGACCGCGTGAAGCTCGCGATCTTCGCGCTGATGGGGCTGATGTGCGCGTTCGCCGGGATCGTGAACACCGCG
CGGCTCGCTGCAGGCTCGCCGTCCGCCGGCACGATGGGCGAACTCGACGCGATCGCCGCCTGCTTCATCGGCGGCACGTC
GATGCGCGGCGGGTCGGGCACCGTGTACGGCGCGCTGATCGGCGCGCTCGTGATGGCGAGTCTCGACAACGGGATGTCGA
TGCTCGACGTCGACGCGTACTGGCAGATGATCGTCAAGGGCGCTGTGCTGGTGCTCGCGGTGTGGATCGACGTCGTGTCG
CGGTCGAACCGGCGCTGA

Upstream 100 bases:

>100_bases
GCGGCGATTTCGTCAACGACGGCCTGACGCAGGAACAGATTCTCGGCGCCGCGCTGAAAGCCGGCCGGCGCCCGACCGAA
CCCACCGCAACGAGTGCGAC

Downstream 100 bases:

>100_bases
GGCGCGGGCGGCCGCGAACGATCAGGCGTGCGTGCGCGGAGCGGTCGTGCGCACGCACGCATCGCGCTACGACCGGTCGC
GATTGCGCGCGCGCGTCGCG

Product: simple sugar transport system permease protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MNTELSSSSSSAGAPGGAPGADARRGAGRPLRQIFVRYKVLALLFAVAAIWLFFSVLTDGAFVTPRNVSNLLRQMSITGM
LACGMVFVIIAGEIDLSVGSLLGLLGGVAAILDVNRHWPVAATVPAVLALGVLIGLFNGWWSTYRRVPSFIVGLGGMLAF
RGVLLGVTGGSTIAPVSDGFVFIGQGYLPRAVGDGLALLLFALVALLVVRQRGTRRRYRLAVAPVWQDAAKVVGAGAVLF
AFVATLDRYGGIPVPVLLLLALLGVFSWIATQTVFGRRIYAVGSNLEATRLSGVDTDRVKLAIFALMGLMCAFAGIVNTA
RLAAGSPSAGTMGELDAIAACFIGGTSMRGGSGTVYGALIGALVMASLDNGMSMLDVDAYWQMIVKGAVLVLAVWIDVVS
RSNRR

Sequences:

>Translated_405_residues
MNTELSSSSSSAGAPGGAPGADARRGAGRPLRQIFVRYKVLALLFAVAAIWLFFSVLTDGAFVTPRNVSNLLRQMSITGM
LACGMVFVIIAGEIDLSVGSLLGLLGGVAAILDVNRHWPVAATVPAVLALGVLIGLFNGWWSTYRRVPSFIVGLGGMLAF
RGVLLGVTGGSTIAPVSDGFVFIGQGYLPRAVGDGLALLLFALVALLVVRQRGTRRRYRLAVAPVWQDAAKVVGAGAVLF
AFVATLDRYGGIPVPVLLLLALLGVFSWIATQTVFGRRIYAVGSNLEATRLSGVDTDRVKLAIFALMGLMCAFAGIVNTA
RLAAGSPSAGTMGELDAIAACFIGGTSMRGGSGTVYGALIGALVMASLDNGMSMLDVDAYWQMIVKGAVLVLAVWIDVVS
RSNRR
>Mature_405_residues
MNTELSSSSSSAGAPGGAPGADARRGAGRPLRQIFVRYKVLALLFAVAAIWLFFSVLTDGAFVTPRNVSNLLRQMSITGM
LACGMVFVIIAGEIDLSVGSLLGLLGGVAAILDVNRHWPVAATVPAVLALGVLIGLFNGWWSTYRRVPSFIVGLGGMLAF
RGVLLGVTGGSTIAPVSDGFVFIGQGYLPRAVGDGLALLLFALVALLVVRQRGTRRRYRLAVAPVWQDAAKVVGAGAVLF
AFVATLDRYGGIPVPVLLLLALLGVFSWIATQTVFGRRIYAVGSNLEATRLSGVDTDRVKLAIFALMGLMCAFAGIVNTA
RLAAGSPSAGTMGELDAIAACFIGGTSMRGGSGTVYGALIGALVMASLDNGMSMLDVDAYWQMIVKGAVLVLAVWIDVVS
RSNRR

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=374, Percent_Identity=54.8128342245989, Blast_Score=338, Evalue=3e-94,
Organism=Escherichia coli, GI1790191, Length=147, Percent_Identity=46.2585034013605, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1788896, Length=388, Percent_Identity=28.0927835051546, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI145693152, Length=155, Percent_Identity=37.4193548387097, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790524, Length=185, Percent_Identity=36.7567567567568, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788471, Length=158, Percent_Identity=37.3417721518987, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787793, Length=153, Percent_Identity=35.9477124183007, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87082395, Length=139, Percent_Identity=33.8129496402878, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787794, Length=162, Percent_Identity=28.3950617283951, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 42211; Mature: 42211

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTELSSSSSSAGAPGGAPGADARRGAGRPLRQIFVRYKVLALLFAVAAIWLFFSVLTDG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AFVTPRNVSNLLRQMSITGMLACGMVFVIIAGEIDLSVGSLLGLLGGVAAILDVNRHWPV
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
AATVPAVLALGVLIGLFNGWWSTYRRVPSFIVGLGGMLAFRGVLLGVTGGSTIAPVSDGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCE
VFIGQGYLPRAVGDGLALLLFALVALLVVRQRGTRRRYRLAVAPVWQDAAKVVGAGAVLF
EEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHEEEEECHHHHHHHHHHHHHHHHH
AFVATLDRYGGIPVPVLLLLALLGVFSWIATQTVFGRRIYAVGSNLEATRLSGVDTDRVK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHHHH
LAIFALMGLMCAFAGIVNTARLAAGSPSAGTMGELDAIAACFIGGTSMRGGSGTVYGALI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH
GALVMASLDNGMSMLDVDAYWQMIVKGAVLVLAVWIDVVSRSNRR
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNTELSSSSSSAGAPGGAPGADARRGAGRPLRQIFVRYKVLALLFAVAAIWLFFSVLTDG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AFVTPRNVSNLLRQMSITGMLACGMVFVIIAGEIDLSVGSLLGLLGGVAAILDVNRHWPV
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
AATVPAVLALGVLIGLFNGWWSTYRRVPSFIVGLGGMLAFRGVLLGVTGGSTIAPVSDGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCE
VFIGQGYLPRAVGDGLALLLFALVALLVVRQRGTRRRYRLAVAPVWQDAAKVVGAGAVLF
EEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHEEEEECHHHHHHHHHHHHHHHHH
AFVATLDRYGGIPVPVLLLLALLGVFSWIATQTVFGRRIYAVGSNLEATRLSGVDTDRVK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHHHH
LAIFALMGLMCAFAGIVNTARLAAGSPSAGTMGELDAIAACFIGGTSMRGGSGTVYGALI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH
GALVMASLDNGMSMLDVDAYWQMIVKGAVLVLAVWIDVVSRSNRR
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]