Click here to switch to the map view.

The map label for this gene is yiaJ [C]

Identifier: 189352578

GI number: 189352578

Start: 652792

End: 653502

Strand: Reverse

Name: yiaJ [C]

Synonym: BMULJ_03809

Alternate gene names: 189352578

Gene position: 653502-652792 (Counterclockwise)

Preceding gene: 189352589

Following gene: 189352572

Centisome position: 26.42

GC content: 64.28

Gene sequence:

>711_bases
ATGGGAAATGACGGGGTAGTTGCCGTGGAAAAGGCGCTGTCGCTACTCGACTGCTTCAAGCCCGGCGCGGAATCGCAGTC
GCTCGCGATGCTGGCGCAGGCGTCCGGCATGCACAAGACGACGGTCTATCGCCTGATGAATTCACTGGAACGGATGGGGT
ATGTCGTGCGTTCGCAGGCGGGGAACTACTCGCTCGGGCATCGCGTGCTGTATCTGGGCAAGCTGTTCGAGCAGTCGTTC
CATTTGTCGTCGGTCGTCGAGCCCGCATTGCACGCGCTCGCCGCGCAGACGAAGGAAAGCGCATCGTACTACGTGCACGA
CAACGGCCGGCGGCTTTGCCTGTTCCGCGCGGAGCCTTCGGAAGGGCTGCGCGAGACGCGTGTCGCCGGCACGACTTTCC
CGCTCGACGACACGGCGATCAGTCAGGTGATCCGATTCTGGGGACTCGGGGAACCGATCTACGACGAGCCGCCCGCGTTG
CCGCTCTTCACGGCCGGTGCGCGCGACGTTCATACCGCGGCGTTCGCGATCCCGATCTTCGGCGCGGGCGACAAGTTCAT
GGCGGCCCTTACGCTTTCCGGACCGGCATCGCGGCTCACTCAGGCGCACGAAACGGGCGAACTCGATCGCGTGCAACTGG
ACGCGGCAGCCGATCTGTCCCGCAGGCTGGGTGCTACTGCGGCATTCTGCGAGAAGTTTTACGGGCTCTGA

Upstream 100 bases:

>100_bases
ACGACATGACCTGCCGTCTGGCACTAGCGTTTACCCTTTTACGTCGTAAACCATCGTTTTACTGTGTACAATCATCGTCG
CGTATCAACGGAGACGAAGA

Downstream 100 bases:

>100_bases
GCGGGACGCGATTGTTGGATGTCGGCGAAATAAAAACCCGCGAAGCCTTGCGGCCTCGCGGGTTTCGAGATTCCTGTGCC
GTTAGGAGAAAGGCGACCGC

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator IclR Family; Transcriptional Regulator; Transcriptional Regulator IclR; IclR Family Regulatory Protein; IclR-Type Transcriptional Regulator; Regulatory Protein IclR; Regulatory Proteins IclR; Regulatory Protein Containing IclR Domain; IclR Family Transcriptional Regulator Family; Leucine And Tryptophan Biosynthesis Regulator; Transcriptional Regulator Family Protein; IclR-Family Transcriptional Regulator; IclR Family Transciptional Regulator

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MGNDGVVAVEKALSLLDCFKPGAESQSLAMLAQASGMHKTTVYRLMNSLERMGYVVRSQAGNYSLGHRVLYLGKLFEQSF
HLSSVVEPALHALAAQTKESASYYVHDNGRRLCLFRAEPSEGLRETRVAGTTFPLDDTAISQVIRFWGLGEPIYDEPPAL
PLFTAGARDVHTAAFAIPIFGAGDKFMAALTLSGPASRLTQAHETGELDRVQLDAAADLSRRLGATAAFCEKFYGL

Sequences:

>Translated_236_residues
MGNDGVVAVEKALSLLDCFKPGAESQSLAMLAQASGMHKTTVYRLMNSLERMGYVVRSQAGNYSLGHRVLYLGKLFEQSF
HLSSVVEPALHALAAQTKESASYYVHDNGRRLCLFRAEPSEGLRETRVAGTTFPLDDTAISQVIRFWGLGEPIYDEPPAL
PLFTAGARDVHTAAFAIPIFGAGDKFMAALTLSGPASRLTQAHETGELDRVQLDAAADLSRRLGATAAFCEKFYGL
>Mature_235_residues
GNDGVVAVEKALSLLDCFKPGAESQSLAMLAQASGMHKTTVYRLMNSLERMGYVVRSQAGNYSLGHRVLYLGKLFEQSFH
LSSVVEPALHALAAQTKESASYYVHDNGRRLCLFRAEPSEGLRETRVAGTTFPLDDTAISQVIRFWGLGEPIYDEPPALP
LFTAGARDVHTAAFAIPIFGAGDKFMAALTLSGPASRLTQAHETGELDRVQLDAAADLSRRLGATAAFCEKFYGL

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789999, Length=249, Percent_Identity=24.0963855421687, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25544; Mature: 25413

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNDGVVAVEKALSLLDCFKPGAESQSLAMLAQASGMHKTTVYRLMNSLERMGYVVRSQA
CCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
GNYSLGHRVLYLGKLFEQSFHLSSVVEPALHALAAQTKESASYYVHDNGRRLCLFRAEPS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCC
EGLRETRVAGTTFPLDDTAISQVIRFWGLGEPIYDEPPALPLFTAGARDVHTAAFAIPIF
CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHEEEEEE
GAGDKFMAALTLSGPASRLTQAHETGELDRVQLDAAADLSRRLGATAAFCEKFYGL
CCCCCEEEEEEECCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHCHHHHHHHHHHCC
>Mature Secondary Structure 
GNDGVVAVEKALSLLDCFKPGAESQSLAMLAQASGMHKTTVYRLMNSLERMGYVVRSQA
CCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
GNYSLGHRVLYLGKLFEQSFHLSSVVEPALHALAAQTKESASYYVHDNGRRLCLFRAEPS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCC
EGLRETRVAGTTFPLDDTAISQVIRFWGLGEPIYDEPPALPLFTAGARDVHTAAFAIPIF
CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHEEEEEE
GAGDKFMAALTLSGPASRLTQAHETGELDRVQLDAAADLSRRLGATAAFCEKFYGL
CCCCCEEEEEEECCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA