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The map label for this gene is ycjZ [C]

Identifier: 189352498

GI number: 189352498

Start: 553733

End: 554626

Strand: Direct

Name: ycjZ [C]

Synonym: BMULJ_03718

Alternate gene names: 189352498

Gene position: 553733-554626 (Clockwise)

Preceding gene: 189352494

Following gene: 189352499

Centisome position: 22.39

GC content: 59.62

Gene sequence:

>894_bases
GTGGCTCGACGCAATCTGAACGACCTTCTGGCTTTCGTAACAATAGCCCGCGAAGGCAGCTTCACGCGTGCTGCCGCCAC
GTTGGGCGTGACGCAGTCGGCGCTGAGTCAAACGATTCGTGCAATGGAGGAAAGCCTGCAGATTCGCCTGCTGAGCCGCA
CCACGCGCAGCGTCTCGCCCACGCCCGCGGGGGAGCGGCTACTGCAGGCGATCGGTCATCGCCTGGACGAAATCGATGCC
GAGCTGGATGCGCTCACAGAATTGCGCGAAAAACCGGCCGGAACAGTCCGCATCACCTGCGGCGACTACATGCTGCATAG
CATTCTGCTGCCCAAGCTGGCGCCGATGCTTCAGGAATATCCAGAAATCAAGCTGGAGTTTGATGTCAACTACGGGTTTC
GGGACATCGTGGCCGACCGCTTTGATGCGGGAGTGCGCCTAGGTAGTACGATTGATAAAGACATGATCGCGGTGCCCATT
GGCCCTGCATTGCGGATGGCAGTCGTCGGATCTCCAGCCTATTTTGCGAATCGACCTATCCCGAAGAAACCGCAGGACCT
GATGCACCACAACTGCATTAATCAGCGCATGCCGACCTCTGGCGGCCTCTATGTCTGGGATTTCGAGCGTCGCGGGCAAA
AATTAAACGTGCGCGTCGACGGGCAGTTGATTTTCAATACGACGCAGCCGCAGGTCGATGCGGCGCTTGGCGGCCTGGGA
CTCACTCTACTGCCCGAGGACGAGCTGATGCCTCATATCGTCTCCGGCCGGCTCGTTCGCGTGCTGGAGGACTGGTGTCC
GCGGTTTGACGGGTATCACCTGTACTATCCAAGCAGGCGCCAGCCCTCGCCGGCGTTCTCGATGGTGCTCGATGCGTTGC
GAATTCGTGGCTGA

Upstream 100 bases:

>100_bases
GACAACCATTATTTTCCTGACCCAGTGCACATTTGACTAGCTAATCACCGCTGATTGCGCTTATTAGATACACTAATGTA
TATAGACTGGGGATACTGCC

Downstream 100 bases:

>100_bases
GCGAAAGCGCTGGCCGCGTCTGCCGCGGGGTCGCCGCCCGCATCGATGCACCTGCGACAGTCTAGAAAGGCTCTGTTTCG
AAAGCAGAGCACCATGCCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MARRNLNDLLAFVTIAREGSFTRAAATLGVTQSALSQTIRAMEESLQIRLLSRTTRSVSPTPAGERLLQAIGHRLDEIDA
ELDALTELREKPAGTVRITCGDYMLHSILLPKLAPMLQEYPEIKLEFDVNYGFRDIVADRFDAGVRLGSTIDKDMIAVPI
GPALRMAVVGSPAYFANRPIPKKPQDLMHHNCINQRMPTSGGLYVWDFERRGQKLNVRVDGQLIFNTTQPQVDAALGGLG
LTLLPEDELMPHIVSGRLVRVLEDWCPRFDGYHLYYPSRRQPSPAFSMVLDALRIRG

Sequences:

>Translated_297_residues
MARRNLNDLLAFVTIAREGSFTRAAATLGVTQSALSQTIRAMEESLQIRLLSRTTRSVSPTPAGERLLQAIGHRLDEIDA
ELDALTELREKPAGTVRITCGDYMLHSILLPKLAPMLQEYPEIKLEFDVNYGFRDIVADRFDAGVRLGSTIDKDMIAVPI
GPALRMAVVGSPAYFANRPIPKKPQDLMHHNCINQRMPTSGGLYVWDFERRGQKLNVRVDGQLIFNTTQPQVDAALGGLG
LTLLPEDELMPHIVSGRLVRVLEDWCPRFDGYHLYYPSRRQPSPAFSMVLDALRIRG
>Mature_296_residues
ARRNLNDLLAFVTIAREGSFTRAAATLGVTQSALSQTIRAMEESLQIRLLSRTTRSVSPTPAGERLLQAIGHRLDEIDAE
LDALTELREKPAGTVRITCGDYMLHSILLPKLAPMLQEYPEIKLEFDVNYGFRDIVADRFDAGVRLGSTIDKDMIAVPIG
PALRMAVVGSPAYFANRPIPKKPQDLMHHNCINQRMPTSGGLYVWDFERRGQKLNVRVDGQLIFNTTQPQVDAALGGLGL
TLLPEDELMPHIVSGRLVRVLEDWCPRFDGYHLYYPSRRQPSPAFSMVLDALRIRG

Specific function: May have a role in the regulation of oprD expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=48.1481481481481, Blast_Score=293, Evalue=6e-81,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=37.3287671232877, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789440, Length=271, Percent_Identity=29.520295202952, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1786401, Length=258, Percent_Identity=29.4573643410853, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=29.553264604811, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789639, Length=188, Percent_Identity=32.9787234042553, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI145693193, Length=287, Percent_Identity=30.6620209059233, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=28.1879194630872, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI145693105, Length=260, Percent_Identity=26.5384615384615, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=163, Percent_Identity=31.9018404907975, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789173, Length=270, Percent_Identity=27.4074074074074, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=121, Percent_Identity=33.0578512396694, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790011, Length=254, Percent_Identity=23.2283464566929, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788706, Length=260, Percent_Identity=25.7692307692308, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786508, Length=149, Percent_Identity=31.5436241610738, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=121, Percent_Identity=29.7520661157025, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33193; Mature: 33062

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRNLNDLLAFVTIAREGSFTRAAATLGVTQSALSQTIRAMEESLQIRLLSRTTRSVSP
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPAGERLLQAIGHRLDEIDAELDALTELREKPAGTVRITCGDYMLHSILLPKLAPMLQEY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHC
PEIKLEFDVNYGFRDIVADRFDAGVRLGSTIDKDMIAVPIGPALRMAVVGSPAYFANRPI
CCEEEEEECCCCHHHHHHHHHHCCCEECCCCCCCEEEECCCHHHEEEEECCCHHHCCCCC
PKKPQDLMHHNCINQRMPTSGGLYVWDFERRGQKLNVRVDGQLIFNTTQPQVDAALGGLG
CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCEEEEECCCCHHHHHHCCCC
LTLLPEDELMPHIVSGRLVRVLEDWCPRFDGYHLYYPSRRQPSPAFSMVLDALRIRG
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARRNLNDLLAFVTIAREGSFTRAAATLGVTQSALSQTIRAMEESLQIRLLSRTTRSVSP
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPAGERLLQAIGHRLDEIDAELDALTELREKPAGTVRITCGDYMLHSILLPKLAPMLQEY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHC
PEIKLEFDVNYGFRDIVADRFDAGVRLGSTIDKDMIAVPIGPALRMAVVGSPAYFANRPI
CCEEEEEECCCCHHHHHHHHHHCCCEECCCCCCCEEEECCCHHHEEEEECCCHHHCCCCC
PKKPQDLMHHNCINQRMPTSGGLYVWDFERRGQKLNVRVDGQLIFNTTQPQVDAALGGLG
CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCEEEEECCCCHHHHHHCCCC
LTLLPEDELMPHIVSGRLVRVLEDWCPRFDGYHLYYPSRRQPSPAFSMVLDALRIRG
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]