Click here to switch to the map view.

The map label for this gene is pecT [H]

Identifier: 189352405

GI number: 189352405

Start: 463280

End: 464137

Strand: Reverse

Name: pecT [H]

Synonym: BMULJ_03624

Alternate gene names: 189352405

Gene position: 464137-463280 (Counterclockwise)

Preceding gene: 189352409

Following gene: 189352404

Centisome position: 18.77

GC content: 75.17

Gene sequence:

>858_bases
ATGAAAGTCCTCGACCTCGATGCGGTGCGCGCGTTCGTGCTGGTCGCCGATCTCGCGAGCTTCACGCGCGCCGCCGACGC
GCTCGGCATCACGCAATCGGCGGTCAGCCTGAAGCTGAAGCGCCTGGAAGCGCATCTCGGCAAGTCGTTGCTCGCGCGCA
CGCCGCGCGTCGTAAAGCTCGCCGTCGACGGCGAAACCTTCCTGCCGGCCGCGCGCGCGTTGCTCGACGCGCACGATCGC
GCGCTCGGCGCAATTGCGGCGGGCACGCGGCGCCTGTCGCTCGGCGTCAGCGAGCACGTCGCGGTGCCCGACCTGCCGGC
CGTGCTGACGAGCCTGCACCGGCAGGATCCGGGGCTGTCGCTCGAAATGCATCTCGGCTCGTCGTCGAACCTGCTCGCGC
AGTACGACGAACGCCGCTTCGACGCGGCGATCGTGCGTCACGAACCGGGCGAGGACCCGCCGCGCGACGACGGCGTGCCG
CTCTTCACCGAGCCGCTCGCCTGGCTCGCCGCGCCGGACTGGGCGCCGCGCGCCGACGAGCCGCTGCCGCTCGCGGTGCT
GGCCGGCCCGTGCGGCGTGCGCGCCGCCGCGCTGCGCGCGCTCGATCAGGCCGGCCTGCCGTGGCGCGAGCGCTTCACGG
GCGGCGGCGTCGCCGCCGTCGCGGCGGCCGCGGCGGCCGGCCTCGCGGTGTGTCCGCTTGCGCGCCGCGTCGCGCCGCGC
ACGCTCGTCGACGTCGGCGCGAAGTTCGGGCTGCCCCCGCTGCCGCGCTCGCAGGTCGTGCTGTATTCGCGCGTGCGCGA
CCCGCGCACGGCGGCCGCGCTGCGCCGCTTCGCCGACAGTCTTGCAATCCCGGCGTAA

Upstream 100 bases:

>100_bases
CTGTCGGTGACGTTGAAGAACGGGAAACGCGACGTCAGGTTAGAACCGCCGAACTATAATGAACAGTCATCGATGAATAT
TTCATCCATTTACATCTGAA

Downstream 100 bases:

>100_bases
ACTAGCAGGTTCCGCCCGTTGCGGGCGTCCCGACCCAAAACCCGATCCCATGAAGCCCGAAACCCGCCAGCACCTCCGCG
CCAACCTGCTGATGCTCGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKVLDLDAVRAFVLVADLASFTRAADALGITQSAVSLKLKRLEAHLGKSLLARTPRVVKLAVDGETFLPAARALLDAHDR
ALGAIAAGTRRLSLGVSEHVAVPDLPAVLTSLHRQDPGLSLEMHLGSSSNLLAQYDERRFDAAIVRHEPGEDPPRDDGVP
LFTEPLAWLAAPDWAPRADEPLPLAVLAGPCGVRAAALRALDQAGLPWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
TLVDVGAKFGLPPLPRSQVVLYSRVRDPRTAAALRRFADSLAIPA

Sequences:

>Translated_285_residues
MKVLDLDAVRAFVLVADLASFTRAADALGITQSAVSLKLKRLEAHLGKSLLARTPRVVKLAVDGETFLPAARALLDAHDR
ALGAIAAGTRRLSLGVSEHVAVPDLPAVLTSLHRQDPGLSLEMHLGSSSNLLAQYDERRFDAAIVRHEPGEDPPRDDGVP
LFTEPLAWLAAPDWAPRADEPLPLAVLAGPCGVRAAALRALDQAGLPWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
TLVDVGAKFGLPPLPRSQVVLYSRVRDPRTAAALRRFADSLAIPA
>Mature_285_residues
MKVLDLDAVRAFVLVADLASFTRAADALGITQSAVSLKLKRLEAHLGKSLLARTPRVVKLAVDGETFLPAARALLDAHDR
ALGAIAAGTRRLSLGVSEHVAVPDLPAVLTSLHRQDPGLSLEMHLGSSSNLLAQYDERRFDAAIVRHEPGEDPPRDDGVP
LFTEPLAWLAAPDWAPRADEPLPLAVLAGPCGVRAAALRALDQAGLPWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
TLVDVGAKFGLPPLPRSQVVLYSRVRDPRTAAALRRFADSLAIPA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=273, Percent_Identity=32.2344322344322, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI48994962, Length=165, Percent_Identity=30.9090909090909, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790399, Length=196, Percent_Identity=31.1224489795918, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788887, Length=171, Percent_Identity=32.1637426900585, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=179, Percent_Identity=27.9329608938547, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI145693193, Length=255, Percent_Identity=27.843137254902, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30045; Mature: 30045

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLDLDAVRAFVLVADLASFTRAADALGITQSAVSLKLKRLEAHLGKSLLARTPRVVKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
AVDGETFLPAARALLDAHDRALGAIAAGTRRLSLGVSEHVAVPDLPAVLTSLHRQDPGLS
EECCCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHCCCCCCHHHHHHHHHHCCCCCE
LEMHLGSSSNLLAQYDERRFDAAIVRHEPGEDPPRDDGVPLFTEPLAWLAAPDWAPRADE
EEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
PLPLAVLAGPCGVRAAALRALDQAGLPWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
CCCEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
TLVDVGAKFGLPPLPRSQVVLYSRVRDPRTAAALRRFADSLAIPA
HHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKVLDLDAVRAFVLVADLASFTRAADALGITQSAVSLKLKRLEAHLGKSLLARTPRVVKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
AVDGETFLPAARALLDAHDRALGAIAAGTRRLSLGVSEHVAVPDLPAVLTSLHRQDPGLS
EECCCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHCCCCCCHHHHHHHHHHCCCCCE
LEMHLGSSSNLLAQYDERRFDAAIVRHEPGEDPPRDDGVPLFTEPLAWLAAPDWAPRADE
EEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
PLPLAVLAGPCGVRAAALRALDQAGLPWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
CCCEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
TLVDVGAKFGLPPLPRSQVVLYSRVRDPRTAAALRRFADSLAIPA
HHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]