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The map label for this gene is yafC [H]

Identifier: 189352322

GI number: 189352322

Start: 372795

End: 373715

Strand: Reverse

Name: yafC [H]

Synonym: BMULJ_03541

Alternate gene names: 189352322

Gene position: 373715-372795 (Counterclockwise)

Preceding gene: 189352327

Following gene: 189352321

Centisome position: 15.11

GC content: 68.19

Gene sequence:

>921_bases
ATGGACTACATCGACAAGCTGCGGATCTTCCGGTCGGTCGTCGAGCTGCGCAGCTTCACGCGCGCGGCCGACATGCATGG
CCTCGCGCGTCCGGTCGTGTCGCGCGCGATCGCCGAACTCGAAGCGCGGTTCGGCGGCCGCTTGCTGCACCGGACCACGC
GCCAGGTGTCGCTGACCGAAACGGCCGAACGCATCTACGAGCGCTGCGCGGCCGTGCTCGACGAGCTGGACGCGCTCGAA
GCCGAAGCGCAGACGCAGACGCGCGAGCCCGACGGCCTGCTGCGGCTCGTCGCGCACACGACCGCCGCGCTGAATCAGTT
CGTGCCGTTGATCGCGGGCTTCAAGGCTGCGCATCCGAAAGTGCGTATCGACGTCACGTTGACCGAGCGGCCCGTCGATC
TGGTCGGCGAGGGCTACGACATCGGCATCGTCGCTCCCTACATGCTGAGCTCCGACACGACGATCGTGCGACTCATCGCG
CGGATACCGTTCGTGATCGTGGCGACGCCCGCGTACCTGCGCGCGCATGGGCGCCCCGCGACGCCGGCCGATCTCGTCGA
CCATCCGTTCGTGCCGCTGTCGCCGTCGCTGCGCCGCCCGGCGCTGTCGTTCCGCGTCGACGGCGACGTGCTGACCCTTC
CGCTGCGCTTCGACATTTCGTCGAACAGCCCCGTGTTCAACCGCGAGATGGTGATGCACGGTTTCGGCATCGGCATCGTG
CCGAGAACGCTCATTGAGACCGAGCTCGCGTCGGGCGCGCTCGTGCAGCTGCTCGGCGACGCCGATCTCGTCGACGGGTG
CGTCGAGCTGAAGCTCGCGTACGCGAACCGGTCGCTGCTGCCGGCGAAGGTCAAGGCGTTCATCGACTATGCGAGCGCGA
TGTGCGACCGCGAAGGCTGGATCACGCCCGTCGCGGCATAG

Upstream 100 bases:

>100_bases
GCAAATGTATATGTGCATATGCATAAAGTCAATGTACACTCGATCGATCATCCCGCTGGTCGTGCGCGTCCGGCGCCCGC
GACCGCCCGAGGAGACGGAC

Downstream 100 bases:

>100_bases
CGCCGCTTCGCGCACTTCATTTGCCGTCGATTGGTACGCGCGGCGCACCAATCTGATCGCGCGGCCGTCATCGCTCCGTG
CGCGCAGACTGCTTAAAGTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTETAERIYERCAAVLDELDALE
AEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPKVRIDVTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIA
RIPFVIVATPAYLRAHGRPATPADLVDHPFVPLSPSLRRPALSFRVDGDVLTLPLRFDISSNSPVFNREMVMHGFGIGIV
PRTLIETELASGALVQLLGDADLVDGCVELKLAYANRSLLPAKVKAFIDYASAMCDREGWITPVAA

Sequences:

>Translated_306_residues
MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTETAERIYERCAAVLDELDALE
AEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPKVRIDVTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIA
RIPFVIVATPAYLRAHGRPATPADLVDHPFVPLSPSLRRPALSFRVDGDVLTLPLRFDISSNSPVFNREMVMHGFGIGIV
PRTLIETELASGALVQLLGDADLVDGCVELKLAYANRSLLPAKVKAFIDYASAMCDREGWITPVAA
>Mature_306_residues
MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTETAERIYERCAAVLDELDALE
AEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPKVRIDVTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIA
RIPFVIVATPAYLRAHGRPATPADLVDHPFVPLSPSLRRPALSFRVDGDVLTLPLRFDISSNSPVFNREMVMHGFGIGIV
PRTLIETELASGALVQLLGDADLVDGCVELKLAYANRSLLPAKVKAFIDYASAMCDREGWITPVAA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=34.7972972972973, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI145693193, Length=304, Percent_Identity=30.5921052631579, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=29.8245614035088, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1789639, Length=261, Percent_Identity=27.2030651340996, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787589, Length=268, Percent_Identity=27.9850746268657, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081978, Length=270, Percent_Identity=29.2592592592593, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789440, Length=254, Percent_Identity=25.5905511811024, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=24.0458015267176, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33577; Mature: 33577

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TAERIYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VRIDVTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIARIPFVIVATPAYLRAHGRPA
EEEEEEEECCCHHHHCCCCCEEEEEHHHCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCC
TPADLVDHPFVPLSPSLRRPALSFRVDGDVLTLPLRFDISSNSPVFNREMVMHGFGIGIV
CCHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCHH
PRTLIETELASGALVQLLGDADLVDGCVELKLAYANRSLLPAKVKAFIDYASAMCDREGW
HHHHHHHHHCCCHHHHHHCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
ITPVAA
EECCCC
>Mature Secondary Structure
MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TAERIYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VRIDVTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIARIPFVIVATPAYLRAHGRPA
EEEEEEEECCCHHHHCCCCCEEEEEHHHCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCC
TPADLVDHPFVPLSPSLRRPALSFRVDGDVLTLPLRFDISSNSPVFNREMVMHGFGIGIV
CCHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCHH
PRTLIETELASGALVQLLGDADLVDGCVELKLAYANRSLLPAKVKAFIDYASAMCDREGW
HHHHHHHHHCCCHHHHHHCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
ITPVAA
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]