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The map label for this gene is cph2 [H]

Identifier: 189352282

GI number: 189352282

Start: 330238

End: 331770

Strand: Reverse

Name: cph2 [H]

Synonym: BMULJ_03501

Alternate gene names: 189352282

Gene position: 331770-330238 (Counterclockwise)

Preceding gene: 189352286

Following gene: 189352281

Centisome position: 13.41

GC content: 69.41

Gene sequence:

>1533_bases
ATGAACTTGCTCCTGCCGTTCGCAGCATTGCGTCGCCATACCGCATCCGTCGTCTCGCGCGTGCTGTCGCCGCGCGGCGT
GCTCGTCGCCGGCATCATGCTGCTGCTGTTCAGCTGGGCGCTTTCCGTGTCGCTGCTGATCGACGCGCGGCGCGATGCGC
GCGATCACGCCGTCGAAAATGCGCGCAATCTGATGCTGCTCATCGAACGCGACGTCGCGCGCAATATCGAGCTTTACGAT
TTGTCGCTGCAAAACGTCGTCGACGGCATTGCCGATCCGGAATTGATGCGCTTGCCGCCGCCGCAGCGGCATCGCGTGCT
GTTCGACCGTGCGGCGACCGGCACGTATCTCGGATCGATTTTCGTGCTCGACGCGCACGGCAATATCACGATCGATTCCG
GCACGATTCCCGCACGCACCGGCAATTTCTCCGAACGCGATTATTTCGTCGCGCATCGCGACGCGCAGGTGAAAGGGCTG
TACATCAGCCGCCCTTATGCGTCGCGGCTGCGCGGCGGCGCACTGACGATCGCGCTCAGCCGCCGCATCGACCGCCCGGA
CGGCAGCTTCGGCGGCGTCGTGGTCGGCACGCTGAGCATCGACTACTTCCGCGCGCTGCTCGACGGCCTCGCCGTCGGCC
GGCACGGCAGCGCGGCGATCGTCGAGGACAACGGCACGCTCGTGAGCCGGCTGCCGTTCGACGCGCGCGTCGTCGGCCTC
GATCTGCACGACTCGCCGCTGTTCATCCAGGCGCGGCGCGCGGGCGACGGCGTGCTGACCGGCACCGGCGCGGTGGACGG
CGTGCGGCGCATTTATGTATACCGGCAACTCGCCGGGCTACCGCTCATCGTCGACGTCGCGCCGGCCGAAGCCGACGTGT
ACCGGCCGTGGCGCCGCCGCGCGGCGTCGATCGTCGTGCTGATGAGCCTGTTTACCGGGTTCGTCGCATGGGGCTCGCTG
CTGCTGTCGCGCGAGCTGCGGCGGCGGCAGGTGGCCGAAGCGAAGCTGTACCGGCTCGCGCGCACCGACTCGCTGACCGG
CCTCGACAACCGCGGCGCGTTCGACGCGGCGCTCGCGCAGGAAGCACGCCGCGCGGCGCGCAGCGGCCGGCCGCTGTCGG
TGCTGTTCGTCGACGTCGATCACTTCAAGGCGTTCAACGACTATTACGGGCACCTGGCCGGCGACGACGTGCTGCGCCGC
GTCGCCCAATGCGCGTCGGGCTGCCTGCGTCGCGCGACCGACCATATCGCGCGCTACGGCGGCGAGGAATTCGTCGTCAC
GCTGCCCGACACCGACGCGCAAGGCGCGGCGACCGTCGCCGAAGGGATCCGGCGCGCGATCGCGGCGCTCGGCATCGAGC
ACGTGAAAAGCCCTTACGGACACGTGACGGCCAGCATCGGGACCGCCACCGACCCGCACGGCCGGATGGACGCGGCGACG
CTGCTGCAGCGTGCCGACGACGCGCTGTACCGCGCGAAATACGGCGGCCGCAACCGTGTCGAATACGCGGCCCGCAGCGC
CGCCGGTGCATGA

Upstream 100 bases:

>100_bases
CGATCGGCATCGTTTTCCGATTCGGGGGATAATACGGCCCGATTTGAAATAACCATCATCAGAAATCGCGCACGACGCGA
ACGTTCCGCCCCGACCGAGG

Downstream 100 bases:

>100_bases
TGCAGGGCGTGCACGCGTTCTTCGTGGACAGCCCGCGCCCGTTCCGCTAGCGTTACGGGTGCCTCGTGCGGCGCAACGCC
GCGCGTTCCAGCCAACCGGT

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MNLLLPFAALRRHTASVVSRVLSPRGVLVAGIMLLLFSWALSVSLLIDARRDARDHAVENARNLMLLIERDVARNIELYD
LSLQNVVDGIADPELMRLPPPQRHRVLFDRAATGTYLGSIFVLDAHGNITIDSGTIPARTGNFSERDYFVAHRDAQVKGL
YISRPYASRLRGGALTIALSRRIDRPDGSFGGVVVGTLSIDYFRALLDGLAVGRHGSAAIVEDNGTLVSRLPFDARVVGL
DLHDSPLFIQARRAGDGVLTGTGAVDGVRRIYVYRQLAGLPLIVDVAPAEADVYRPWRRRAASIVVLMSLFTGFVAWGSL
LLSRELRRRQVAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRR
VAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAALGIEHVKSPYGHVTASIGTATDPHGRMDAAT
LLQRADDALYRAKYGGRNRVEYAARSAAGA

Sequences:

>Translated_510_residues
MNLLLPFAALRRHTASVVSRVLSPRGVLVAGIMLLLFSWALSVSLLIDARRDARDHAVENARNLMLLIERDVARNIELYD
LSLQNVVDGIADPELMRLPPPQRHRVLFDRAATGTYLGSIFVLDAHGNITIDSGTIPARTGNFSERDYFVAHRDAQVKGL
YISRPYASRLRGGALTIALSRRIDRPDGSFGGVVVGTLSIDYFRALLDGLAVGRHGSAAIVEDNGTLVSRLPFDARVVGL
DLHDSPLFIQARRAGDGVLTGTGAVDGVRRIYVYRQLAGLPLIVDVAPAEADVYRPWRRRAASIVVLMSLFTGFVAWGSL
LLSRELRRRQVAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRR
VAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAALGIEHVKSPYGHVTASIGTATDPHGRMDAAT
LLQRADDALYRAKYGGRNRVEYAARSAAGA
>Mature_510_residues
MNLLLPFAALRRHTASVVSRVLSPRGVLVAGIMLLLFSWALSVSLLIDARRDARDHAVENARNLMLLIERDVARNIELYD
LSLQNVVDGIADPELMRLPPPQRHRVLFDRAATGTYLGSIFVLDAHGNITIDSGTIPARTGNFSERDYFVAHRDAQVKGL
YISRPYASRLRGGALTIALSRRIDRPDGSFGGVVVGTLSIDYFRALLDGLAVGRHGSAAIVEDNGTLVSRLPFDARVVGL
DLHDSPLFIQARRAGDGVLTGTGAVDGVRRIYVYRQLAGLPLIVDVAPAEADVYRPWRRRAASIVVLMSLFTGFVAWGSL
LLSRELRRRQVAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRR
VAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAALGIEHVKSPYGHVTASIGTATDPHGRMDAAT
LLQRADDALYRAKYGGRNRVEYAARSAAGA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=40.251572327044, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082007, Length=201, Percent_Identity=38.3084577114428, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=38.121546961326, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1786584, Length=252, Percent_Identity=30.952380952381, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=35.9756097560976, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788381, Length=195, Percent_Identity=33.8461538461538, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=33.1395348837209, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787816, Length=180, Percent_Identity=31.1111111111111, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=32.0987654320988, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=205, Percent_Identity=31.7073170731707, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081974, Length=104, Percent_Identity=33.6538461538462, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=33.1428571428571, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 55511; Mature: 55511

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLPFAALRRHTASVVSRVLSPRGVLVAGIMLLLFSWALSVSLLIDARRDARDHAVEN
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECHHCHHHHHHHH
ARNLMLLIERDVARNIELYDLSLQNVVDGIADPELMRLPPPQRHRVLFDRAATGTYLGSI
HCCEEEEEECHHHCCCEEEEEEHHHHHCCCCCCCCEECCCCCHHHEEEECCCCCCEEEEE
FVLDAHGNITIDSGTIPARTGNFSERDYFVAHRDAQVKGLYISRPYASRLRGGALTIALS
EEEECCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCHHHHCCCCEEEEEEE
RRIDRPDGSFGGVVVGTLSIDYFRALLDGLAVGRHGSAAIVEDNGTLVSRLPFDARVVGL
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCEEEEEE
DLHDSPLFIQARRAGDGVLTGTGAVDGVRRIYVYRQLAGLPLIVDVAPAEADVYRPWRRR
EECCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCHHHHH
AASIVVLMSLFTGFVAWGSLLLSRELRRRQVAEAKLYRLARTDSLTGLDNRGAFDAALAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
EARRAARSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRRVAQCASGCLRRATDHIARYG
HHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEEFVVTLPDTDAQGAATVAEGIRRAIAALGIEHVKSPYGHVTASIGTATDPHGRMDAAT
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHH
LLQRADDALYRAKYGGRNRVEYAARSAAGA
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MNLLLPFAALRRHTASVVSRVLSPRGVLVAGIMLLLFSWALSVSLLIDARRDARDHAVEN
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECHHCHHHHHHHH
ARNLMLLIERDVARNIELYDLSLQNVVDGIADPELMRLPPPQRHRVLFDRAATGTYLGSI
HCCEEEEEECHHHCCCEEEEEEHHHHHCCCCCCCCEECCCCCHHHEEEECCCCCCEEEEE
FVLDAHGNITIDSGTIPARTGNFSERDYFVAHRDAQVKGLYISRPYASRLRGGALTIALS
EEEECCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCHHHHCCCCEEEEEEE
RRIDRPDGSFGGVVVGTLSIDYFRALLDGLAVGRHGSAAIVEDNGTLVSRLPFDARVVGL
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCEEEEEE
DLHDSPLFIQARRAGDGVLTGTGAVDGVRRIYVYRQLAGLPLIVDVAPAEADVYRPWRRR
EECCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCHHHHH
AASIVVLMSLFTGFVAWGSLLLSRELRRRQVAEAKLYRLARTDSLTGLDNRGAFDAALAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
EARRAARSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRRVAQCASGCLRRATDHIARYG
HHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEEFVVTLPDTDAQGAATVAEGIRRAIAALGIEHVKSPYGHVTASIGTATDPHGRMDAAT
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHH
LLQRADDALYRAKYGGRNRVEYAARSAAGA
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]