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The map label for this gene is dgdR [H]

Identifier: 189352098

GI number: 189352098

Start: 120066

End: 120941

Strand: Reverse

Name: dgdR [H]

Synonym: BMULJ_03316

Alternate gene names: 189352098

Gene position: 120941-120066 (Counterclockwise)

Preceding gene: 189352101

Following gene: 189352087

Centisome position: 4.89

GC content: 67.47

Gene sequence:

>876_bases
ATGAAGATGCTCGATCACGACGTGCTGGCCACCGTCGTCGCCGTCGCGGAGACCGGCAACATGACGCGCGCGGCCGAGGC
CGTGAACCGTTCGCAGTCCGCCGTCAGCATGCAGATCAAGAGCCTCGAGGACGCGATCGGCCGCCCGCTGTTCGTGCGCA
AGCCGCGCAGCATCGTGCTCACGCGCGAAGGCGAGGTGCTGCTCGGTTTCGCCAGACGAATGCTCGCCTTGCGCGACGAG
GCGTGGGCGGCCGTCGTGCGGCCGGAGGTGACCGGCAAGGTCGTGATCGGCGTGCCGGACGACTATGCGTCGTCGCTGCT
GCCGTCGGTCTTGAAGAAATTCTCGGCGACTTATCCGAAGGTCGAGATCCAGGTGATCGGACTGCCGAGCAGCGCGCTCG
CGCCGCTGCTGAAGGATGGCACCGTCGATCTCGTGTGCGGCACGCGTGTGAAGGGGTTATCGGGCGATTTCGTGCGCCAC
GAGCCGATGGCGTGGGCGGCGATGACGAACGGCCCGCGCGTGTGGGAAGAACGGCCGCTGCCGATCGCGGTGTTCATGCC
CGGCAGCGTCGCACGCGAGAACGCGATCCGCAGCCTCGAACGCGCGAAGGTGCCGTACCGGACGTCGTATGAAAGCCCGA
GCCTGCTCGGTCTGCTCAGCATGGTGGAAGCGGGTCTCGCGGTCGCGCCGCTTGCGCGCTGCGCGATTCCCGCGCAGCTG
TCGATGCTCGGCCGCTCGCATGGATTGCCGGACCTCCCGCCGCTCGAGCTGATTCTCGCGCGCAGCACGAAATCGAAACG
TCCGCCGTGCGACTTTCTCGCCGAACAGTTGATGGAGGATCTGCAGCGTCAGACCGGGCAGGCCGGCGACGCGTAG

Upstream 100 bases:

>100_bases
ACATCGGGACGATGCGGCCGGCTTGATTCCACTATGGCAGACACATAGCAACAATAAAAACGCATAATGTTGATCGTTAC
CTTCAATTTTCCTGATACCG

Downstream 100 bases:

>100_bases
CGAGGCCGCACGCCGTATCGCATGCGGCGCGGCCCCGCGATGCGCGGCACGGCGGCAAGACAGCCTGCCGTGCGACGCCG
TGGCGTCTGGTGCGCCGTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKMLDHDVLATVVAVAETGNMTRAAEAVNRSQSAVSMQIKSLEDAIGRPLFVRKPRSIVLTREGEVLLGFARRMLALRDE
AWAAVVRPEVTGKVVIGVPDDYASSLLPSVLKKFSATYPKVEIQVIGLPSSALAPLLKDGTVDLVCGTRVKGLSGDFVRH
EPMAWAAMTNGPRVWEERPLPIAVFMPGSVARENAIRSLERAKVPYRTSYESPSLLGLLSMVEAGLAVAPLARCAIPAQL
SMLGRSHGLPDLPPLELILARSTKSKRPPCDFLAEQLMEDLQRQTGQAGDA

Sequences:

>Translated_291_residues
MKMLDHDVLATVVAVAETGNMTRAAEAVNRSQSAVSMQIKSLEDAIGRPLFVRKPRSIVLTREGEVLLGFARRMLALRDE
AWAAVVRPEVTGKVVIGVPDDYASSLLPSVLKKFSATYPKVEIQVIGLPSSALAPLLKDGTVDLVCGTRVKGLSGDFVRH
EPMAWAAMTNGPRVWEERPLPIAVFMPGSVARENAIRSLERAKVPYRTSYESPSLLGLLSMVEAGLAVAPLARCAIPAQL
SMLGRSHGLPDLPPLELILARSTKSKRPPCDFLAEQLMEDLQRQTGQAGDA
>Mature_291_residues
MKMLDHDVLATVVAVAETGNMTRAAEAVNRSQSAVSMQIKSLEDAIGRPLFVRKPRSIVLTREGEVLLGFARRMLALRDE
AWAAVVRPEVTGKVVIGVPDDYASSLLPSVLKKFSATYPKVEIQVIGLPSSALAPLLKDGTVDLVCGTRVKGLSGDFVRH
EPMAWAAMTNGPRVWEERPLPIAVFMPGSVARENAIRSLERAKVPYRTSYESPSLLGLLSMVEAGLAVAPLARCAIPAQL
SMLGRSHGLPDLPPLELILARSTKSKRPPCDFLAEQLMEDLQRQTGQAGDA

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=265, Percent_Identity=32.8301886792453, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790399, Length=246, Percent_Identity=28.8617886178862, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787806, Length=140, Percent_Identity=30, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI157672245, Length=134, Percent_Identity=34.3283582089552, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=161, Percent_Identity=29.8136645962733, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=149, Percent_Identity=32.2147651006711, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788887, Length=140, Percent_Identity=34.2857142857143, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081904, Length=212, Percent_Identity=29.7169811320755, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=149, Percent_Identity=26.8456375838926, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787879, Length=243, Percent_Identity=29.6296296296296, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=146, Percent_Identity=31.5068493150685, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789173, Length=119, Percent_Identity=31.9327731092437, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=122, Percent_Identity=33.6065573770492, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31456; Mature: 31456

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMLDHDVLATVVAVAETGNMTRAAEAVNRSQSAVSMQIKSLEDAIGRPLFVRKPRSIVL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
TREGEVLLGFARRMLALRDEAWAAVVRPEVTGKVVIGVPDDYASSLLPSVLKKFSATYPK
EECCCHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCE
VEIQVIGLPSSALAPLLKDGTVDLVCGTRVKGLSGDFVRHEPMAWAAMTNGPRVWEERPL
EEEEEEECCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
PIAVFMPGSVARENAIRSLERAKVPYRTSYESPSLLGLLSMVEAGLAVAPLARCAIPAQL
CEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHH
SMLGRSHGLPDLPPLELILARSTKSKRPPCDFLAEQLMEDLQRQTGQAGDA
HHHHHHCCCCCCCHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKMLDHDVLATVVAVAETGNMTRAAEAVNRSQSAVSMQIKSLEDAIGRPLFVRKPRSIVL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
TREGEVLLGFARRMLALRDEAWAAVVRPEVTGKVVIGVPDDYASSLLPSVLKKFSATYPK
EECCCHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCE
VEIQVIGLPSSALAPLLKDGTVDLVCGTRVKGLSGDFVRHEPMAWAAMTNGPRVWEERPL
EEEEEEECCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
PIAVFMPGSVARENAIRSLERAKVPYRTSYESPSLLGLLSMVEAGLAVAPLARCAIPAQL
CEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHH
SMLGRSHGLPDLPPLELILARSTKSKRPPCDFLAEQLMEDLQRQTGQAGDA
HHHHHHCCCCCCCHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]