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The map label for this gene is traC [H]

Identifier: 189184728

GI number: 189184728

Start: 1851185

End: 1853674

Strand: Direct

Name: traC [H]

Synonym: OTT_1821

Alternate gene names: 189184728

Gene position: 1851185-1853674 (Clockwise)

Preceding gene: 189184727

Following gene: 189184729

Centisome position: 92.15

GC content: 36.22

Gene sequence:

>2490_bases
GTGAACGCAAGCATACATAAGGATTTTGATCGAGAAAGATTTTCTAAACATTTTGTCTATGAATCGTATGATGAGGAGAC
TCAGCTATTCTTTAATCGTGGTTCAATAGGTTTTGTATTGCTTGCATGGCCATTGGTTGGAGCTAGTGTTTCGGCTCAAA
ATGAAATTGCTGAATTTCTGAAAAGCGATGAAAATTTACCAGCTGAAAGTAGCCTACAAGTCTTAATGATTGGTAGTAAT
AATATAGAGCATTTTTTAAGCAACTGGCAGTCATATCGTAAAGGAGAGATATTTATTGAGTTAGCTAACAAAAGAACAGA
GTTTTTACGTGATCAAGCTCAAAAGTCAGGCTCTGTAAAGGATGTAGTATTGTTAATTTCAGTTACTATACCTAATTTAA
ATGCAAATATCGATGATATGATTCGCAGACGAGATGCTTTAAAAGATACGTTTAGGTCCATTGGATTAAGCACTGAAAAT
GTGAATGCACAGCAATTATTAAAGTTCCTGAGAGTAATATTTGGCTGGCCTGAAGAAGAACATTCGAATATTAACCAGTA
TGAAATATTGTCTGAACAAATTCTAAGTGGAGATTTTTCGTTATTTGAGAATGATGATTGTGTAAATATAAATGATGATC
AAATATTTATTAGCTTAGAAGCAAGAAAGAGGCCTGCAGAGTGGAAATTATCTGCTATGGATCTGTTTTTAGGCAATGAA
ATGCGTCGTGATGAATATATAAAATCAAATTTCCTGATTCATTTTGGTTTGCAAATTTTACCAAATCAAGCGATGGAAAG
GACTGCAGCCATAACTAAAAGAGAAGCACTAGAAAGAAATATTAATGCAGGAATGGGTAAATTTTTTCCTGACATACAAC
AAGAGGCTGCTGATTTAGCAGGCGTAGTATCTGATCTGCAGAGTGGTGATAGAGTTGTTAATATTCACTTCAATGTTATT
ATGTTTGATAAAACAAAAAAGGCTAAGCAATCTGCATCAGCATTTTGCTCGATGTTAAGACGCAGTGGATGGTATTTTGT
TCCATGCAAATATGACCATGTAGCCGTGTTATTAGCAGCTTTACCAATGCAGTTAGTTGAGCAAGGTCAAAAAGGTATAT
TGGGTCAAAAAACCTCAGGACTTGGAGTAGCGCTTTCTAGCTTAGGTAGAGGCATAAAAACTGTTTCTGTAGAGAGTAAG
GTATTATTGCCAATAATTGGTGAGTGGAAAGGCGATTTAAGCTCTCCAGGTATGTTACTAGCTGGAAGACGAGGACAAAT
AATGTACTGGTCTCCTTTTGGTGGAGCTTTATTACCTGCATTAAATAAAAATGCAGCAGCTCCAAACGAGAACTTTAACC
TTTGTATAGCTGGAGTTCCAGGCTCTGGTAAATCTGTTTTTATGCAAGAATTAATGCTATCGGTTTTAGGAGTTGGTGGT
AAGGTTTTTGTTCTTGATTACGGAAGATCATTTAAGCGTACATGCTTGATTCTAGGTGGTAGCTACATAGAATTTGACAT
GAAAAATCCTGTATCGATTAATCCATTTTCAGAGGTGCCAGAGGATGACAGTTCAAAGTCTATAGAAGCTAGATCGGACT
TTTTATCTAATTTTCCGTCTATTTTAGCTACCATGGCTGCGCCTCAGTATGGAACAAGCGATCTACAACAACCAATGTTA
CAAAGAGCTTTAATATCTGTATGGCAAAAAAGGGGCTCTAAGGCTGAAATAACCGATGTTGCAGACTGGTTATCGAATAG
AGAAGAATCATATGCTAAAGAACTTGGAAATATGCTCTTTCCTTTTACTAAAGATGGTCAACATGGAAAATTTTTTAGCG
GTAAGGCACAATTATCTCTAAACTCTGACATTGTGGTGATTGAAACAGATCATTTAAGGTCTGTACCAGAGCTGTTAGCT
GTGATTGTACAGATTATGATTGTTCATATTAATCAAACAATGGTTAAAGGAGATAGAAGTAGACCGTTTTTAATTATGAT
CGATGAAGCCTGGAAGCTCTTAGCTGGAAAGCGTTCAGGAGAGTTTATTGAAGAGGCTGGAAGAATAGCTCGAAAATATA
ATGGCTCAATTGCTTTAGCAACTCAACAACTCACGGATTACTTTCGTCAAGAGGGTTCAGCGTCTGAAAAAGCATTTGAG
AACTCATCACATAAGATAATCTTAAAGCAAAATTCGGAATCATTTAAGGCAATGAGAGCTAATCCAAAGCTTGCAGGCTT
TGTTGATGAAGATTGGAAGCTAAATTTACTGCAATCTGTTCATTCAAATCCTCCACATTATAGTGAAGTAGCTATTTACA
GCCCTAATGTTTCAGGTGTTGTAGGCAGATTAATGATTGATCCGTTTACTCTACTATTAACTTCGACAAATGCTAGAGAT
TATCAGGCTATAGAAGACCATATGGCTAAGGGTATGAATGTCAGTGAAGCAATTAATTATGTGATAAGAGAGCGAGAAAT
AATTCCATGA

Upstream 100 bases:

>100_bases
AAAACTCGAAAAAAGACTTGTATTACATGTTATAGAAGACGTGTTGATAAAAACTCTAAGAAATACCTAATTAATTTATT
TAAACCAAAACAGAGTCAAG

Downstream 100 bases:

>100_bases
AGCACGGAGTAGTAATTGGTATAGGCACATTCTTTGCTTTATTTGCTGTTGCTTATCAAGTAAGCGATACAATGGCTAAT
TCTTTAAATGCTGATATAGG

Product: putative conjugative transfer protein TraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 829; Mature: 829

Protein sequence:

>829_residues
MNASIHKDFDRERFSKHFVYESYDEETQLFFNRGSIGFVLLAWPLVGASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIEHFLSNWQSYRKGEIFIELANKRTEFLRDQAQKSGSVKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNINDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVSDLQSGDRVVNIHFNVI
MFDKTKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGQKGILGQKTSGLGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSSKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QRALISVWQKRGSKAEITDVADWLSNREESYAKELGNMLFPFTKDGQHGKFFSGKAQLSLNSDIVVIETDHLRSVPELLA
VIVQIMIVHINQTMVKGDRSRPFLIMIDEAWKLLAGKRSGEFIEEAGRIARKYNGSIALATQQLTDYFRQEGSASEKAFE
NSSHKIILKQNSESFKAMRANPKLAGFVDEDWKLNLLQSVHSNPPHYSEVAIYSPNVSGVVGRLMIDPFTLLLTSTNARD
YQAIEDHMAKGMNVSEAINYVIREREIIP

Sequences:

>Translated_829_residues
MNASIHKDFDRERFSKHFVYESYDEETQLFFNRGSIGFVLLAWPLVGASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIEHFLSNWQSYRKGEIFIELANKRTEFLRDQAQKSGSVKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNINDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVSDLQSGDRVVNIHFNVI
MFDKTKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGQKGILGQKTSGLGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSSKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QRALISVWQKRGSKAEITDVADWLSNREESYAKELGNMLFPFTKDGQHGKFFSGKAQLSLNSDIVVIETDHLRSVPELLA
VIVQIMIVHINQTMVKGDRSRPFLIMIDEAWKLLAGKRSGEFIEEAGRIARKYNGSIALATQQLTDYFRQEGSASEKAFE
NSSHKIILKQNSESFKAMRANPKLAGFVDEDWKLNLLQSVHSNPPHYSEVAIYSPNVSGVVGRLMIDPFTLLLTSTNARD
YQAIEDHMAKGMNVSEAINYVIREREIIP
>Mature_829_residues
MNASIHKDFDRERFSKHFVYESYDEETQLFFNRGSIGFVLLAWPLVGASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIEHFLSNWQSYRKGEIFIELANKRTEFLRDQAQKSGSVKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNINDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVSDLQSGDRVVNIHFNVI
MFDKTKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGQKGILGQKTSGLGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSSKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QRALISVWQKRGSKAEITDVADWLSNREESYAKELGNMLFPFTKDGQHGKFFSGKAQLSLNSDIVVIETDHLRSVPELLA
VIVQIMIVHINQTMVKGDRSRPFLIMIDEAWKLLAGKRSGEFIEEAGRIARKYNGSIALATQQLTDYFRQEGSASEKAFE
NSSHKIILKQNSESFKAMRANPKLAGFVDEDWKLNLLQSVHSNPPHYSEVAIYSPNVSGVVGRLMIDPFTLLLTSTNARD
YQAIEDHMAKGMNVSEAINYVIREREIIP

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 92777; Mature: 92777

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASIHKDFDRERFSKHFVYESYDEETQLFFNRGSIGFVLLAWPLVGASVSAQNEIAEFL
CCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEHHHHCCCCCCHHHHHHHH
KSDENLPAESSLQVLMIGSNNIEHFLSNWQSYRKGEIFIELANKRTEFLRDQAQKSGSVK
HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCC
DVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEE
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
HSNINQYEILSEQILSGDFSLFENDDCVNINDDQIFISLEARKRPAEWKLSAMDLFLGNE
HCCCCHHHHHHHHHHCCCCCEECCCCEEECCCCEEEEEEECCCCCCCCCHHHHHHHHCCC
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLA
HHHHHHHHHCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHH
GVVSDLQSGDRVVNIHFNVIMFDKTKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAA
HHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
LPMQLVEQGQKGILGQKTSGLGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCCCCCEEE
AGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
ECCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSSKSIEARSDFLSNFPS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHH
ILATMAAPQYGTSDLQQPMLQRALISVWQKRGSKAEITDVADWLSNREESYAKELGNMLF
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHCCCCC
PFTKDGQHGKFFSGKAQLSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTMVKGDRS
CCCCCCCCCCEECCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RPFLIMIDEAWKLLAGKRSGEFIEEAGRIARKYNGSIALATQQLTDYFRQEGSASEKAFE
CCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCHHHHHC
NSSHKIILKQNSESFKAMRANPKLAGFVDEDWKLNLLQSVHSNPPHYSEVAIYSPNVSGV
CCCCEEEEECCCCHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHH
VGRLMIDPFTLLLTSTNARDYQAIEDHMAKGMNVSEAINYVIREREIIP
HHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNASIHKDFDRERFSKHFVYESYDEETQLFFNRGSIGFVLLAWPLVGASVSAQNEIAEFL
CCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEHHHHCCCCCCHHHHHHHH
KSDENLPAESSLQVLMIGSNNIEHFLSNWQSYRKGEIFIELANKRTEFLRDQAQKSGSVK
HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCC
DVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEE
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
HSNINQYEILSEQILSGDFSLFENDDCVNINDDQIFISLEARKRPAEWKLSAMDLFLGNE
HCCCCHHHHHHHHHHCCCCCEECCCCEEECCCCEEEEEEECCCCCCCCCHHHHHHHHCCC
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLA
HHHHHHHHHCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHH
GVVSDLQSGDRVVNIHFNVIMFDKTKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAA
HHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
LPMQLVEQGQKGILGQKTSGLGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCCCCCEEE
AGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
ECCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSSKSIEARSDFLSNFPS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHH
ILATMAAPQYGTSDLQQPMLQRALISVWQKRGSKAEITDVADWLSNREESYAKELGNMLF
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHCCCCC
PFTKDGQHGKFFSGKAQLSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTMVKGDRS
CCCCCCCCCCEECCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RPFLIMIDEAWKLLAGKRSGEFIEEAGRIARKYNGSIALATQQLTDYFRQEGSASEKAFE
CCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCHHHHHC
NSSHKIILKQNSESFKAMRANPKLAGFVDEDWKLNLLQSVHSNPPHYSEVAIYSPNVSGV
CCCCEEEEECCCCHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHH
VGRLMIDPFTLLLTSTNARDYQAIEDHMAKGMNVSEAINYVIREREIIP
HHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]