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The map label for this gene is traC [H]

Identifier: 189184615

GI number: 189184615

Start: 1731100

End: 1733112

Strand: Direct

Name: traC [H]

Synonym: OTT_1708

Alternate gene names: 189184615

Gene position: 1731100-1733112 (Clockwise)

Preceding gene: 189184614

Following gene: 189184616

Centisome position: 86.17

GC content: 35.77

Gene sequence:

>2013_bases
GTGAACGCAAGCATACATAAGGATTTTGATCGAGAAAGATTTTCTAAACACTTTGTCTATGAATCATATGATGATGAGAC
TCAGCTATTCTTTAATCGTTGTTCAATAGGCTTTGTATTGCTTGCATGCCCATTGGCTGAAGCTAGTGTTTCGGCTCAAA
ATGAAATTGCTGAATTTCTGAAAAGCGATGAAAATTTACCTGCTGAAAGTAGCCTTCAAGTATTGATGATTGGTAGTAAT
AATATAGAGAATTTTTTAAGCAACTGGCAGTCATATCGTAAAGGAGAGATATTTATTGAGTTAGCAAATAAAAGAACAGA
GTTTTTGCGTGATCAAGCTCAAAAAGTAGGTTCTATAAAGGATGTAGTATTGTTAATTTCAGTTACTATACCTAATTTAA
ATGCAAATATCGATGATATGATTCGCAGACGAGATGCTTTAAAAGATACGTTTAGGTCAATTGGATTAAGCACTGAAAAT
GTGAATGCGCAGCAATTATTAAAGTTTCTGAGAGTAATATTTGGCTGGCCTGAAGAAGAACATTCAAATATTAACCAGTA
TGAAATATTGTCTGAACAAATTCTAAGTGGAGATTTTTCGTTATTTGAGAATGATGATTGTGTAAATGTAAATGATGATC
AAATATTTATCAGTCTAGAAGCAAGAAAGAGGCCTGCAGAGTGGAAATTATCTGCTATGGATCTGTTTTTAGGTAATGAA
ATGCGTCGTGATGAATATATAAAATCAAATTTCCTGATTCATTTTGGTCTGCAAATTTTACCAAATCAAGCGATGGAAAG
GACTGCTGCCATAACTAAAAGAGAAGCGCTAGAAAGAAATATTAATGCGGGAATGGGTAAATTTTTTCCTGACATACAAC
AAGAAGCTGCTGATTTAGCTGGTGTAGTAGCTGCTTTACAGAGTGGTGATAGAGTCGTTAATATTCACTTCAATGTTATT
ATGTTTGACAAAATAAAAAAAGCTAAGCAATCTGCATCGGCCTTTTGTTCGATGTTAAGGCGCAGTGGATGGTATTTTGT
GCCATGTAAATATGATCATGTGGCCGTGTTACTAGCTGCACTACCAATGCAATTAGTTGAACAAGGCCCAAAAGGTATAT
TGGGTCAAAAAACATCAGGAGTTGGAGTAGCACTTTCTAGCTTAGGTAGAGGCATAAAAACTGTTTCTGTAGAGAGTAAA
GTATTATTGCCAATCATTGGTGAATGGAAAGGTGATTTAAGCTCTCCAGGTATGTTGCTAGCTGGAAGACGAGGTCAAAT
AATGTACTGGTCACCTTTTGGCGGAGCTTTATTACCTGCATTAAATAAGAATGCAGCAGCTCCAAATGAGAACTTTAACC
TTTGTATAGCTGGAGTTCCAGGCTCTGGAAAATCTGTTTTTATGCAAGAATTAATGCTATCTGTTCTAGGAGTTGGTGGT
AAAGTTTTTGTTCTTGATTATGGAAGATCATTTAAGCGTACATGCTTGATTCTAGGCGGCAGCTACATAGAATTTGACAT
GAAAAATCCTGTATCAATTAATCCATTTTCAGAGGTGCCAGAGGATGATAGTGCAAAGTCTATAGAGGCTAGATCAGACT
TTTTATCTAACTTTCCATCTATTTTAGCTACTATGGCAGCTCCACAGTATGGAACAAGCGATCTACAACAACCAATGCTA
CAGAGAGCTTTGATATCAGTCTGGCAAAAAAATGGAGCTAAAGCTGAAATCACCGATATTGCAGACTGGTTATCAAATAG
AGAAGAATCATATGCTAAAGAGCTTGGAAATATGCTCTTTCCTTTTACTAAAGATGGTCAACATGGAAGATTTTTTAGTG
GTAAGGCGCAATTATCCTTGAATTCAGACATAGTAGTGATTGAAACAGATCATCTACGCTCTGTACCAGAGCTGTTAGCT
GTGATTGTACAGATTATGATTGTTCATATTAATCAAACAATAGTTAAGGGAGATAGAAGTAGACCTTTTTTAATTATGAT
CGATGAAGCCTGA

Upstream 100 bases:

>100_bases
AGGCAAGCTAAAGCTATTCAAAGCGTAGCTGTTGTTAATAAGTCGCCGAAAAAACCAAAAAAATATCTTATTAATTTATT
TAAATCAAAACAGAGTCAAG

Downstream 100 bases:

>100_bases
AAGCTATTAGCTGGAAAGCGTTCAGGAGAGTTTATTGAAGAAGCAGGTCGAATAGCTCGAAAATATAATGGATCGATTGC
TTTAGCTACTCAGCAACTCA

Product: putative conjugative transfer protein TraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVI
MFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPELLA
VIVQIMIVHINQTIVKGDRSRPFLIMIDEA

Sequences:

>Translated_670_residues
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVI
MFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPELLA
VIVQIMIVHINQTIVKGDRSRPFLIMIDEA
>Mature_670_residues
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVI
MFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPELLA
VIVQIMIVHINQTIVKGDRSRPFLIMIDEA

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 74746; Mature: 74746

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIAEFL
CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHH
KSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIK
HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCHH
DVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEE
HEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
HSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
HCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCC
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLA
HHHHHHHHHCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHH
GVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAA
HHHHHHHCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
LPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCEEE
AGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
ECCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHH
ILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLF
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCC
PFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTIVKGDRS
CCCCCCCCCCEECCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPFLIMIDEA
CCEEEEEECC
>Mature Secondary Structure
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIAEFL
CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHH
KSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIK
HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCHH
DVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEE
HEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
HSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
HCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCC
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLA
HHHHHHHHHCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHH
GVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAA
HHHHHHHCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
LPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCEEE
AGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
ECCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
KVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHH
ILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLF
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCC
PFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTIVKGDRS
CCCCCCCCCCEECCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPFLIMIDEA
CCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]