| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184303
Identifier: 189184303
GI number: 189184303
Start: 1428876
End: 1429652
Strand: Reverse
Name: 189184303
Synonym: OTT_1396
Alternate gene names: NA
Gene position: 1429652-1428876 (Counterclockwise)
Preceding gene: 189184305
Following gene: 189184301
Centisome position: 71.16
GC content: 31.27
Gene sequence:
>777_bases ATGAATAATATTTATAGTGCTGTAGTAAGCATGGTTAACAATGTTACAAGTAATTTTAATTTTCCTCACGTAAGTCATTG TCTTCTTATTCCAAGAGTTGATCAATTATTCCTTAAAAGCACTAATAAGGCTATCGAGTATTACGAAATTTGTAAGTCTA TTTTTATTCATAATCCAGAGCGTGATGATTTTTATGGGCATATGAATGTAAAAATTTTACATGATTCTGTTAATTGTGGT TCCCAAACTTGTATTGGAAGTTCAAGTATGACAGTGCCTGGTGATCTTACATCTGGAATAAATGGTAAAGGTATAGTCAT TACTGGATTATTTAATAATAGTAACAATCATTATTTATATAATAGCCTTCAAAAATGGAGTAGAGGTACCTGTAAAATGA TAGCAAACTGTAGTGTTGAGTTGATAGTAGAAAATATCAACAATATGATGGGTGACAGTGAAAAAACTGGAGAAACTTGT ATAGCAGCAGGGGCAGGAGCAGGGGCAGGAGTAGTAGTAGGTATTATTGCTACTTCTTTAATAGTATACTTTTTCTGTAG AAGCAAAAAGAATGATTGTGTTGTTGTTAAAAAATGCACAGATTTAAATAGTAATCCTAGTAATTTTTTTATGGAAAAAG TTAAAGACAGTACAAATGGCGATAATATGATAGTTCATCAGCATCATGATAATATACATGATCCTATATATGATGAACTC ATGGGAAGCAGTGCTAAGGATACAACAGCAGTAACAGTAGAAATATCTGATGTTTAA
Upstream 100 bases:
>100_bases AAAATAGTAACTAAATAAAATCATTGACACTTGTTAAATATTGGTATACCATCCCTCACTTAAAGTTGGCATATTTTTTA ATTAATATAGGGTGATTACA
Downstream 100 bases:
>100_bases TATTAATTTATAGCATTTCCATTTTTATTTTATAAAACCCCAACATATCATAATATAGCATAGATAATATATTATGATAT GTTATTATTTCAATGCTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MNNIYSAVVSMVNNVTSNFNFPHVSHCLLIPRVDQLFLKSTNKAIEYYEICKSIFIHNPERDDFYGHMNVKILHDSVNCG SQTCIGSSSMTVPGDLTSGINGKGIVITGLFNNSNNHYLYNSLQKWSRGTCKMIANCSVELIVENINNMMGDSEKTGETC IAAGAGAGAGVVVGIIATSLIVYFFCRSKKNDCVVVKKCTDLNSNPSNFFMEKVKDSTNGDNMIVHQHHDNIHDPIYDEL MGSSAKDTTAVTVEISDV
Sequences:
>Translated_258_residues MNNIYSAVVSMVNNVTSNFNFPHVSHCLLIPRVDQLFLKSTNKAIEYYEICKSIFIHNPERDDFYGHMNVKILHDSVNCG SQTCIGSSSMTVPGDLTSGINGKGIVITGLFNNSNNHYLYNSLQKWSRGTCKMIANCSVELIVENINNMMGDSEKTGETC IAAGAGAGAGVVVGIIATSLIVYFFCRSKKNDCVVVKKCTDLNSNPSNFFMEKVKDSTNGDNMIVHQHHDNIHDPIYDEL MGSSAKDTTAVTVEISDV >Mature_258_residues MNNIYSAVVSMVNNVTSNFNFPHVSHCLLIPRVDQLFLKSTNKAIEYYEICKSIFIHNPERDDFYGHMNVKILHDSVNCG SQTCIGSSSMTVPGDLTSGINGKGIVITGLFNNSNNHYLYNSLQKWSRGTCKMIANCSVELIVENINNMMGDSEKTGETC IAAGAGAGAGVVVGIIATSLIVYFFCRSKKNDCVVVKKCTDLNSNPSNFFMEKVKDSTNGDNMIVHQHHDNIHDPIYDEL MGSSAKDTTAVTVEISDV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28279; Mature: 28279
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 7.8 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 7.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNIYSAVVSMVNNVTSNFNFPHVSHCLLIPRVDQLFLKSTNKAIEYYEICKSIFIHNPE CCHHHHHHHHHHHHHHCCCCCCCHHHEEECCCHHHHHHHHCCHHHHHHHHHHHHHCCCCC RDDFYGHMNVKILHDSVNCGSQTCIGSSSMTVPGDLTSGINGKGIVITGLFNNSNNHYLY CCCEEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEH NSLQKWSRGTCKMIANCSVELIVENINNMMGDSEKTGETCIAAGAGAGAGVVVGIIATSL HHHHHHCCCCEEHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH IVYFFCRSKKNDCVVVKKCTDLNSNPSNFFMEKVKDSTNGDNMIVHQHHDNIHDPIYDEL HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHH MGSSAKDTTAVTVEISDV CCCCCCCCEEEEEEEECC >Mature Secondary Structure MNNIYSAVVSMVNNVTSNFNFPHVSHCLLIPRVDQLFLKSTNKAIEYYEICKSIFIHNPE CCHHHHHHHHHHHHHHCCCCCCCHHHEEECCCHHHHHHHHCCHHHHHHHHHHHHHCCCCC RDDFYGHMNVKILHDSVNCGSQTCIGSSSMTVPGDLTSGINGKGIVITGLFNNSNNHYLY CCCEEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEH NSLQKWSRGTCKMIANCSVELIVENINNMMGDSEKTGETCIAAGAGAGAGVVVGIIATSL HHHHHHCCCCEEHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH IVYFFCRSKKNDCVVVKKCTDLNSNPSNFFMEKVKDSTNGDNMIVHQHHDNIHDPIYDEL HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHH MGSSAKDTTAVTVEISDV CCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA