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The map label for this gene is rnd

Identifier: 189184295

GI number: 189184295

Start: 1416850

End: 1417482

Strand: Reverse

Name: rnd

Synonym: OTT_1388

Alternate gene names: NA

Gene position: 1417482-1416850 (Counterclockwise)

Preceding gene: 189184296

Following gene: 189184294

Centisome position: 70.56

GC content: 30.65

Gene sequence:

>633_bases
ATGAAAATTCACATATTTATTAATGATATACCAGATAATTTGATGATTTCAGGAGATTTAGCTATCGATACTGAAACAAT
GGGGTTAAACCTTATACGGGATAGGCTATGTTTGCTACAGTTTTGTCAAGAAAGCAAAGATGATACTATTGATGATAAAG
AAGTTTTTTTAGTTAAGTTTGAAGATCAACAATATAACTGTCGTAATCTAAAAAAACTGCTTATGGACGATGGTAGAACA
AAAATTTTTCATTTTGCTAGGTTTGATTTAGCAGCAATTCAGTACTATTTAGGTGTTACTTTAAATAATATTTTTTGTAC
TAATGTAGCTTCAAAATTAGTTAGAACATATACAGACTCTCATGGATTAAAAGATCTTTGTCGAGAGTTGCTAGGGATAC
AGATTTCAAAGCAATGCCAAAGTTCAGATTGGGGAGGACAGAGTTTAACTAGTGATCAAGAAGAATATGCAGCAAAGGAT
GTAGTATATCTGCATAGAATTAAAAATATTCTAGAGGAAATGTTAATTCGGGAACAGAGATTAGATATAGCTCAAAAGAT
ATTTAAGTTTTTACCAGCTAGAGCTGAACTTGATGTTATTGGTTGGCAAGATATAGATATTTTAAGTCATTAG

Upstream 100 bases:

>100_bases
AGATATGCTTGATGAGCAAGTAAGAAAAAAACTAGGATTAGCTCATTCTAATGAAAAAATATTTAGTGTTAATAAAGATT
TAGCTACAAATTAAAATATT

Downstream 100 bases:

>100_bases
ATGTTTTATAAAATTGCTTTTATTAACCTAGGGTTTGATAAAAAAATTGATTATACCAAAGCTCTTTCCATCCATGACAT
TTATTCAACTTCTTCACTCT

Product: ribonuclease D

Products: NA

Alternate protein names: Ribonuclease D; 3-5' Exonuclease Family Protein; RNAse D Protein; 3- 5' Exonuclease Family Protein; Exonuclease; Ribonuclease; 3-5' Exonuclease Domain-Containing Protein; Ribonuclease D 3-5' Exonuclease

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKIHIFINDIPDNLMISGDLAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKFEDQQYNCRNLKKLLMDDGRT
KIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDSHGLKDLCRELLGIQISKQCQSSDWGGQSLTSDQEEYAAKD
VVYLHRIKNILEEMLIREQRLDIAQKIFKFLPARAELDVIGWQDIDILSH

Sequences:

>Translated_210_residues
MKIHIFINDIPDNLMISGDLAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKFEDQQYNCRNLKKLLMDDGRT
KIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDSHGLKDLCRELLGIQISKQCQSSDWGGQSLTSDQEEYAAKD
VVYLHRIKNILEEMLIREQRLDIAQKIFKFLPARAELDVIGWQDIDILSH
>Mature_210_residues
MKIHIFINDIPDNLMISGDLAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKFEDQQYNCRNLKKLLMDDGRT
KIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDSHGLKDLCRELLGIQISKQCQSSDWGGQSLTSDQEEYAAKD
VVYLHRIKNILEEMLIREQRLDIAQKIFKFLPARAELDVIGWQDIDILSH

Specific function: Unknown

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.26.3

Molecular weight: Translated: 24383; Mature: 24383

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIHIFINDIPDNLMISGDLAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKF
CEEEEEEECCCCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
EDQQYNCRNLKKLLMDDGRTKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDS
ECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HGLKDLCRELLGIQISKQCQSSDWGGQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREQR
CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDIAQKIFKFLPARAELDVIGWQDIDILSH
HHHHHHHHHHCCCCCCEEEECCCCCHHCCC
>Mature Secondary Structure
MKIHIFINDIPDNLMISGDLAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKF
CEEEEEEECCCCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
EDQQYNCRNLKKLLMDDGRTKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDS
ECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HGLKDLCRELLGIQISKQCQSSDWGGQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREQR
CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDIAQKIFKFLPARAELDVIGWQDIDILSH
HHHHHHHHHHCCCCCCEEEECCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA