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The map label for this gene is ompA [H]

Identifier: 189184227

GI number: 189184227

Start: 1338402

End: 1339016

Strand: Direct

Name: ompA [H]

Synonym: OTT_1320

Alternate gene names: 189184227

Gene position: 1338402-1339016 (Clockwise)

Preceding gene: 189184226

Following gene: 189184229

Centisome position: 66.62

GC content: 31.71

Gene sequence:

>615_bases
ATGATTAAAAAGTCAATTATTAGTATATGTGTATTAGTGCTACTTTCTGGTTACAAGTGGAAATGTTTATGGCAAAGATC
TAAACATAGTAACTTTATTTCTAAAGTTGTAGGAACTAAAGATTTTAAAGGAGATAACGATGATATAGTTGGAATGATCT
CAAGTATTAATGCTGAAAGTAGCGATCAAGTAACAAGTAATAATGCGAATGCGCAACAAGAAGAATATGTTGATGTAAAG
CATGAACAGTTTTTACAAGCTATACATGGGAAACATAAAGTATATTTTGCAACTGAAAAATTTGATCTTTCTGAGGAGAG
CAAGAGAGTTTTAAGAGCTCAAAGTGCTTGGTTAAAAAATAATCCAGATGTTAAAATAATTATTGAAGGGCATTGTGATG
AACGTGGAACCAGAGAATATAACCTTGCTCTTGGGAAAAAGAGGGCTGATGCCGTTAAACAATTCTTAGTGACATTAGGT
GTAAGCAGAGATAAAATAGAAACTACTTCTTATGGAAAAGACAAGCCTGAAGTTGAAGTTACTAAAGATAATAAAGAGGA
AGCATATAGACTTAATCGTAGGTCTGTCACAATTATTAAAAGTAATATAGCATAG

Upstream 100 bases:

>100_bases
GTATAATGAAGATTTTTATTAATTTTTTTTTGGTTAGATATGTAAAATAGTTGCAATACTGCAATTACTACATTTTAAAT
ATTTTGATGGATAAGCAAGT

Downstream 100 bases:

>100_bases
AAGTAATTAAGAATATCTTCTCACAGAATAAGATTTCTTCTTGAAGAGATATTCTTATATGTGTTATACATATAGTTAAA
TATCTTGACATATGTGATAT

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MIKKSIISICVLVLLSGYKWKCLWQRSKHSNFISKVVGTKDFKGDNDDIVGMISSINAESSDQVTSNNANAQQEEYVDVK
HEQFLQAIHGKHKVYFATEKFDLSEESKRVLRAQSAWLKNNPDVKIIIEGHCDERGTREYNLALGKKRADAVKQFLVTLG
VSRDKIETTSYGKDKPEVEVTKDNKEEAYRLNRRSVTIIKSNIA

Sequences:

>Translated_204_residues
MIKKSIISICVLVLLSGYKWKCLWQRSKHSNFISKVVGTKDFKGDNDDIVGMISSINAESSDQVTSNNANAQQEEYVDVK
HEQFLQAIHGKHKVYFATEKFDLSEESKRVLRAQSAWLKNNPDVKIIIEGHCDERGTREYNLALGKKRADAVKQFLVTLG
VSRDKIETTSYGKDKPEVEVTKDNKEEAYRLNRRSVTIIKSNIA
>Mature_204_residues
MIKKSIISICVLVLLSGYKWKCLWQRSKHSNFISKVVGTKDFKGDNDDIVGMISSINAESSDQVTSNNANAQQEEYVDVK
HEQFLQAIHGKHKVYFATEKFDLSEESKRVLRAQSAWLKNNPDVKIIIEGHCDERGTREYNLALGKKRADAVKQFLVTLG
VSRDKIETTSYGKDKPEVEVTKDNKEEAYRLNRRSVTIIKSNIA

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=105, Percent_Identity=46.6666666666667, Blast_Score=104, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23224; Mature: 23224

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKSIISICVLVLLSGYKWKCLWQRSKHSNFISKVVGTKDFKGDNDDIVGMISSINAES
CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
SDQVTSNNANAQQEEYVDVKHEQFLQAIHGKHKVYFATEKFDLSEESKRVLRAQSAWLKN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
NPDVKIIIEGHCDERGTREYNLALGKKRADAVKQFLVTLGVSRDKIETTSYGKDKPEVEV
CCCEEEEEECCCCCCCCCEEEHHHCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEE
TKDNKEEAYRLNRRSVTIIKSNIA
ECCCHHHHHHHCCCEEEEEECCCC
>Mature Secondary Structure
MIKKSIISICVLVLLSGYKWKCLWQRSKHSNFISKVVGTKDFKGDNDDIVGMISSINAES
CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
SDQVTSNNANAQQEEYVDVKHEQFLQAIHGKHKVYFATEKFDLSEESKRVLRAQSAWLKN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
NPDVKIIIEGHCDERGTREYNLALGKKRADAVKQFLVTLGVSRDKIETTSYGKDKPEVEV
CCCEEEEEECCCCCCCCCEEEHHHCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEE
TKDNKEEAYRLNRRSVTIIKSNIA
ECCCHHHHHHHCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]