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The map label for this gene is cycM [H]

Identifier: 189184219

GI number: 189184219

Start: 1329545

End: 1330093

Strand: Reverse

Name: cycM [H]

Synonym: OTT_1312

Alternate gene names: 189184219

Gene position: 1330093-1329545 (Counterclockwise)

Preceding gene: 189184223

Following gene: 189184218

Centisome position: 66.21

GC content: 31.33

Gene sequence:

>549_bases
ATGGACGGCTTTGAACTAAACAAAGTAGCTGCATCTGTTTTATTAACAGGGGTAATAATAATGTCAGTAACTATATTAAC
TGATACTTTATATAAGCCACTTCTACTTCCTGCTAAGCGTGGTTATCATGTTGATGCCATTAGCGATCAAGCTCAACAGA
GTAACTTTAGTCCATTAGCAAAAGAGGCTATATTCGAGCTTGATGAACAAAAAATTGCTGAATTAATAAAAAATGCTAGC
TTAGAATCTGGTAGTAAGCTTTTCAAGCAAAAATGCTCTTCTTGTCATACTAGTAATAAGGATGGAGTTAACAGAGTTGG
ACCTAATTTATATAATGTCGTAAATAGAATTAAAGCTACTTATCCAAATTATAATTACTCTGCTGCAATGGCTTCTCAAG
GTGGTAGCTGGGATGAGAAATCTTTGTTTTTATATTTACATAAACCAACTAAATACATTCCAGGTACTAGAATGTCATTT
ATTGGATTACCTAATGCTAAAGATATAGCAGATGTAATAAAATTTTTAAAAGAAAATACTAATAAATAA

Upstream 100 bases:

>100_bases
TGCAAATCAACTTAGTTTTAAAGATAATTTATCGTAGTATCTACCAAAGTAATTTTTACATAGTAATGATTAATTTTAAT
CAAAAGTAACAAATTTAAGT

Downstream 100 bases:

>100_bases
GAAATGCTTGTATAGTTCAAAGTTAGATATAATGAATATAGCGGAGAATATAAGGAGTAAGTATTTAACCATAGTCTAAC
ATAATAAAAATAAAGATAAC

Product: cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDGFELNKVAASVLLTGVIIMSVTILTDTLYKPLLLPAKRGYHVDAISDQAQQSNFSPLAKEAIFELDEQKIAELIKNAS
LESGSKLFKQKCSSCHTSNKDGVNRVGPNLYNVVNRIKATYPNYNYSAAMASQGGSWDEKSLFLYLHKPTKYIPGTRMSF
IGLPNAKDIADVIKFLKENTNK

Sequences:

>Translated_182_residues
MDGFELNKVAASVLLTGVIIMSVTILTDTLYKPLLLPAKRGYHVDAISDQAQQSNFSPLAKEAIFELDEQKIAELIKNAS
LESGSKLFKQKCSSCHTSNKDGVNRVGPNLYNVVNRIKATYPNYNYSAAMASQGGSWDEKSLFLYLHKPTKYIPGTRMSF
IGLPNAKDIADVIKFLKENTNK
>Mature_182_residues
MDGFELNKVAASVLLTGVIIMSVTILTDTLYKPLLLPAKRGYHVDAISDQAQQSNFSPLAKEAIFELDEQKIAELIKNAS
LESGSKLFKQKCSSCHTSNKDGVNRVGPNLYNVVNRIKATYPNYNYSAAMASQGGSWDEKSLFLYLHKPTKYIPGTRMSF
IGLPNAKDIADVIKFLKENTNK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=104, Percent_Identity=43.2692307692308, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17566554, Length=96, Percent_Identity=44.7916666666667, Blast_Score=92, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17539604, Length=107, Percent_Identity=39.2523364485981, Blast_Score=90, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6320796, Length=101, Percent_Identity=41.5841584158416, Blast_Score=92, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=41.747572815534, Blast_Score=90, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17137204, Length=98, Percent_Identity=48.9795918367347, Blast_Score=98, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17137228, Length=102, Percent_Identity=41.1764705882353, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 20151; Mature: 20151

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGFELNKVAASVLLTGVIIMSVTILTDTLYKPLLLPAKRGYHVDAISDQAQQSNFSPLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHH
KEAIFELDEQKIAELIKNASLESGSKLFKQKCSSCHTSNKDGVNRVGPNLYNVVNRIKAT
HHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHC
YPNYNYSAAMASQGGSWDEKSLFLYLHKPTKYIPGTRMSFIGLPNAKDIADVIKFLKENT
CCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC
NK
CC
>Mature Secondary Structure
MDGFELNKVAASVLLTGVIIMSVTILTDTLYKPLLLPAKRGYHVDAISDQAQQSNFSPLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHH
KEAIFELDEQKIAELIKNASLESGSKLFKQKCSSCHTSNKDGVNRVGPNLYNVVNRIKAT
HHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHC
YPNYNYSAAMASQGGSWDEKSLFLYLHKPTKYIPGTRMSFIGLPNAKDIADVIKFLKENT
CCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC
NK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]