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The map label for this gene is traD [C]

Identifier: 189184184

GI number: 189184184

Start: 1300949

End: 1301482

Strand: Direct

Name: traD [C]

Synonym: OTT_1277

Alternate gene names: 189184184

Gene position: 1300949-1301482 (Clockwise)

Preceding gene: 189184183

Following gene: 189184188

Centisome position: 64.76

GC content: 31.84

Gene sequence:

>534_bases
TTGTATTATTTTGTAATTGAAAGATATGTGCAGCTTAAGCTAGCAATTGGTGAGCATTTTTATGATATCGATCAAATAGG
CATTAAGTTTTATAGTTTAAGGTTTAAAAAATGGATGCACCTCAATGCTCAAGACTTTTTGCATGAGTTTTATACAGGCC
AACATGGATTTAAAATACAGCAATTATGGGAATTCCTAATCAATTCAGCATTATTAGAAGGATTAATTGTTTTTGCTATT
GGTGTGATAATCTCAATTGTTTTCTTTACAGCTCAAGGTAAAAAAACGATTATTAAAGCCAAAATTAGAGGTGCTGATTT
TGTACGGAGTAGAAATCTAGCCAAAATGCTAAAAAGCGCTAAAAAGGCCTCGAAAATCTGTTTTGGAGACTTGCTATTAG
TAAAGAATAGTGAAAGGCTACATATTCTTATTACTGGAACAACAGGTACTGGTAAAACTAATATGCTTAATGAACTGCTA
CCACAAATTCGATTTTCAGGGCTGATAATATTTCTAACAGCATATAATCCTTGA

Upstream 100 bases:

>100_bases
GAAATAGCCTTTTTATCTTCGATTGGAGATATATTTCCAATTTATGATTATATCACATTAGAATCTATTTCTGGTATATC
AAAAAGTATTTCTGAGCAGT

Downstream 100 bases:

>100_bases
GTTTTTAATACATTATTGAAGTCATTTTTGACTGTACAGACTACTGCTTCCTTATCCTCTAGAACTTTTTCAGCTTTTTC
AGTATTTACGTCATTTTTAA

Product: putative conjugative transfer protein TraD

Products: NA

Alternate protein names: Conjugative Transfer Protein

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MYYFVIERYVQLKLAIGEHFYDIDQIGIKFYSLRFKKWMHLNAQDFLHEFYTGQHGFKIQQLWEFLINSALLEGLIVFAI
GVIISIVFFTAQGKKTIIKAKIRGADFVRSRNLAKMLKSAKKASKICFGDLLLVKNSERLHILITGTTGTGKTNMLNELL
PQIRFSGLIIFLTAYNP

Sequences:

>Translated_177_residues
MYYFVIERYVQLKLAIGEHFYDIDQIGIKFYSLRFKKWMHLNAQDFLHEFYTGQHGFKIQQLWEFLINSALLEGLIVFAI
GVIISIVFFTAQGKKTIIKAKIRGADFVRSRNLAKMLKSAKKASKICFGDLLLVKNSERLHILITGTTGTGKTNMLNELL
PQIRFSGLIIFLTAYNP
>Mature_177_residues
MYYFVIERYVQLKLAIGEHFYDIDQIGIKFYSLRFKKWMHLNAQDFLHEFYTGQHGFKIQQLWEFLINSALLEGLIVFAI
GVIISIVFFTAQGKKTIIKAKIRGADFVRSRNLAKMLKSAKKASKICFGDLLLVKNSERLHILITGTTGTGKTNMLNELL
PQIRFSGLIIFLTAYNP

Specific function: Trad Is A Cell Envelope Protein. The Function Of Trad Is Unknown But It Is Essential For DNA Transfer. It May Form Or May Be Part Of A Non-Specific Pore For DNA Export, Or It May Directly Energizes DNA Transport. [C]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20386; Mature: 20386

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYFVIERYVQLKLAIGEHFYDIDQIGIKFYSLRFKKWMHLNAQDFLHEFYTGQHGFKIQ
CEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
QLWEFLINSALLEGLIVFAIGVIISIVFFTAQGKKTIIKAKIRGADFVRSRNLAKMLKSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
KKASKICFGDLLLVKNSERLHILITGTTGTGKTNMLNELLPQIRFSGLIIFLTAYNP
HHHHHHHHHEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCC
>Mature Secondary Structure
MYYFVIERYVQLKLAIGEHFYDIDQIGIKFYSLRFKKWMHLNAQDFLHEFYTGQHGFKIQ
CEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
QLWEFLINSALLEGLIVFAIGVIISIVFFTAQGKKTIIKAKIRGADFVRSRNLAKMLKSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
KKASKICFGDLLLVKNSERLHILITGTTGTGKTNMLNELLPQIRFSGLIIFLTAYNP
HHHHHHHHHEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA