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The map label for this gene is radC [C]

Identifier: 189184090

GI number: 189184090

Start: 1207012

End: 1207692

Strand: Reverse

Name: radC [C]

Synonym: OTT_1183

Alternate gene names: 189184090

Gene position: 1207692-1207012 (Counterclockwise)

Preceding gene: 189184096

Following gene: 189184089

Centisome position: 60.11

GC content: 30.69

Gene sequence:

>681_bases
ATGAATTCGCAATATTACATTGGTCATAGAAAAAGATTAAAAGAACGCTTTTTGCGATCCATTCCTAGTGATAGTTTGCC
TGACTATGAGCTGCTAGAATTGCTACTATTTCACTCAATTCCAAGACAAGATGTAAAACCAATAGCGAAAGAATTGCTTA
AGCAATTTACTACCCTATCCAATGTAGTATATGCTGAAAAAGATAAGCTTATGTCTTTACCTATGGTCAGTAATTCAGTC
TGTGTACCAATATTTTTAGTCAAAGAGTTTATTCGTAGAATTTTAGCACAAAAAGTCATCAATCAACATGTGCTAAGCTC
TTGGTCAGCTTTATTAGAATACTTAAAAATTACTATGGGTAAAGCTAAAACTGAACAATTTCGCGTATTATTCCTTAATA
AAAAAAATATTATTATTGCAGATGAACTACATGGTATTGGTACAGTTGATCAAACTCCAGTATATCCAAGAGAAATAGTA
AAAAGAGCATTATTTCATGAAGCAAGTGCTATAATACTTGTGCATAACCATCCTAGCGGTACTCCTAAACCATCAGCAAT
AGATATTGAAATTACTACAAAGATTGTTGAAGCTTGCAAAACTTTCAGCATTATTGTACATGATCATGTTATTATCTGTA
GTAATAATTTTTTTAGTTTTAAATCAAACTTACTTTTATAA

Upstream 100 bases:

>100_bases
AAAGAATTTTATTTACATAGTGATCACTAAGTTATTGATCACTATGTAAATTTCCATACAATGGAGTTATGTTTACTTTT
TTAACATTAACATTAATTTT

Downstream 100 bases:

>100_bases
GTTGTAAAGCACTATTAAATGTTAAAATATTATCACCATGCAATTAATTAGCAAAACTACTTTTCAAATTATACGAAACA
TACTTTCAAGCAAATATGGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNSQYYIGHRKRLKERFLRSIPSDSLPDYELLELLLFHSIPRQDVKPIAKELLKQFTTLSNVVYAEKDKLMSLPMVSNSV
CVPIFLVKEFIRRILAQKVINQHVLSSWSALLEYLKITMGKAKTEQFRVLFLNKKNIIIADELHGIGTVDQTPVYPREIV
KRALFHEASAIILVHNHPSGTPKPSAIDIEITTKIVEACKTFSIIVHDHVIICSNNFFSFKSNLLL

Sequences:

>Translated_226_residues
MNSQYYIGHRKRLKERFLRSIPSDSLPDYELLELLLFHSIPRQDVKPIAKELLKQFTTLSNVVYAEKDKLMSLPMVSNSV
CVPIFLVKEFIRRILAQKVINQHVLSSWSALLEYLKITMGKAKTEQFRVLFLNKKNIIIADELHGIGTVDQTPVYPREIV
KRALFHEASAIILVHNHPSGTPKPSAIDIEITTKIVEACKTFSIIVHDHVIICSNNFFSFKSNLLL
>Mature_226_residues
MNSQYYIGHRKRLKERFLRSIPSDSLPDYELLELLLFHSIPRQDVKPIAKELLKQFTTLSNVVYAEKDKLMSLPMVSNSV
CVPIFLVKEFIRRILAQKVINQHVLSSWSALLEYLKITMGKAKTEQFRVLFLNKKNIIIADELHGIGTVDQTPVYPREIV
KRALFHEASAIILVHNHPSGTPKPSAIDIEITTKIVEACKTFSIIVHDHVIICSNNFFSFKSNLLL

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788312, Length=145, Percent_Identity=41.3793103448276, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI2367100, Length=145, Percent_Identity=37.9310344827586, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082300, Length=219, Percent_Identity=30.5936073059361, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788997, Length=123, Percent_Identity=41.4634146341463, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25910; Mature: 25910

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSQYYIGHRKRLKERFLRSIPSDSLPDYELLELLLFHSIPRQDVKPIAKELLKQFTTLS
CCCCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
NVVYAEKDKLMSLPMVSNSVCVPIFLVKEFIRRILAQKVINQHVLSSWSALLEYLKITMG
HHHHHCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KAKTEQFRVLFLNKKNIIIADELHGIGTVDQTPVYPREIVKRALFHEASAIILVHNHPSG
CCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
TPKPSAIDIEITTKIVEACKTFSIIVHDHVIICSNNFFSFKSNLLL
CCCCCEEEEEHHHHHHHHHHHHEEEEECEEEEECCCCCHHHCCCCC
>Mature Secondary Structure
MNSQYYIGHRKRLKERFLRSIPSDSLPDYELLELLLFHSIPRQDVKPIAKELLKQFTTLS
CCCCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
NVVYAEKDKLMSLPMVSNSVCVPIFLVKEFIRRILAQKVINQHVLSSWSALLEYLKITMG
HHHHHCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KAKTEQFRVLFLNKKNIIIADELHGIGTVDQTPVYPREIVKRALFHEASAIILVHNHPSG
CCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
TPKPSAIDIEITTKIVEACKTFSIIVHDHVIICSNNFFSFKSNLLL
CCCCCEEEEEHHHHHHHHHHHHEEEEECEEEEECCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA