BacMap

Definition	Orientia tsutsugamushi str. Ikeda, complete genome.
Accession	NC_010793
Length	2,008,987

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The map label for this gene is yahD [C]

Identifier: 189184019

GI number: 189184019

Start: 1146364

End: 1147071

Strand: Reverse

Name: yahD [C]

Synonym: OTT_1112

Alternate gene names: 189184019

Gene position: 1147071-1146364 (Counterclockwise)

Preceding gene: 189184020

Following gene: 189184018

Centisome position: 57.1

GC content: 31.5

Gene sequence:

>708_bases
ATGATATTAAAATCTAAGACTAAGTATACCTTACATAGCGCTATTCAAGATGGTGATATTAAAAAAGTGAAGCAGCTTAT
TAATAAGGACAGTACACTTGTCAATTCAAAATATAAAGACGGTACTACAGCTTTATCTGTTGCTTTGAAATATAAGAATC
TACCTATTGCCGAGATTTTACTAAGCAATGGAGCTAACGTAAACGCACAAGATAATGATGGGCACACTGCTTTACATCTT
GTTGTTGACACAATTCAAGTATATTATGAATTTTTCGAAAAATATCCTACCTATTGCAATGATCATATAGCATTACTGCT
AAAATATAATGCTGATGTAAATATCGAGAATAATCAAGGTAATACACCTTTATCTGATGCTGTTGAATGCAAATGTGTAG
AACCTTTAGCAATTATGCTAAAACATAATTCTACTGGTATTAATAAAAAATATGATGAAGGAGAAACGCTACTACATATT
GCTGTTCGTAATAAAATCATAGATGTTATACAGCTTTTGATTGATTATGGAGCAGATATTGATGCAAAAGATGATAACGG
CATGACTACTATAGATTATGCTGCTAAAAGCGGTAATAGCGACCTATCTGTAGCTCCACCTATTTTTAAAGGCTTATCTT
ATAAATTGTTTGCTGATAAAGCTTACATATCTAAAGCATTATTTCATCAACTGTTCTCCAGTTGCTAA

Upstream 100 bases:

>100_bases
TATCTTAAACTACCAGAGATTGGAGAACGCTTAAGTGAATATTGTAAACTTCATGCTAGTTAAAATGTAGTAAATAATTG
AGAATGAAAGGATTAAATAT

Downstream 100 bases:

>100_bases
GTTTATTTACGATTCTTCGTAAAGATATGCAAACACATTTATTAGACATGGAATATATGCGACTTTTATACATTAATTAA
GTTTTTTTTACTCGCTTTAA

Product: ankyrin repeat-containing protein 03_08

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHL
VVDTIQVYYEFFEKYPTYCNDHIALLLKYNADVNIENNQGNTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHI
AVRNKIIDVIQLLIDYGADIDAKDDNGMTTIDYAAKSGNSDLSVAPPIFKGLSYKLFADKAYISKALFHQLFSSC

Sequences:

>Translated_235_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHL
VVDTIQVYYEFFEKYPTYCNDHIALLLKYNADVNIENNQGNTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHI
AVRNKIIDVIQLLIDYGADIDAKDDNGMTTIDYAAKSGNSDLSVAPPIFKGLSYKLFADKAYISKALFHQLFSSC
>Mature_235_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHL
VVDTIQVYYEFFEKYPTYCNDHIALLLKYNADVNIENNQGNTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHI
AVRNKIIDVIQLLIDYGADIDAKDDNGMTTIDYAAKSGNSDLSVAPPIFKGLSYKLFADKAYISKALFHQLFSSC

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI62988328, Length=182, Percent_Identity=31.8681318681319, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI268607595, Length=182, Percent_Identity=31.8681318681319, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI62177127, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI188595682, Length=228, Percent_Identity=25.4385964912281, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI52426737, Length=228, Percent_Identity=25.4385964912281, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI52426735, Length=228, Percent_Identity=25.4385964912281, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI224809478, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI89363047, Length=200, Percent_Identity=28.5, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI224809472, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224809470, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224809468, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224809476, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224809474, Length=201, Percent_Identity=28.3582089552239, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI32967601, Length=184, Percent_Identity=29.3478260869565, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI70780357, Length=206, Percent_Identity=29.126213592233, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI70780355, Length=206, Percent_Identity=29.126213592233, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI70780353, Length=206, Percent_Identity=29.126213592233, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI70780359, Length=206, Percent_Identity=29.126213592233, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI215598574, Length=206, Percent_Identity=29.126213592233, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI30348954, Length=192, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI68131557, Length=201, Percent_Identity=30.8457711442786, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI24233530, Length=218, Percent_Identity=29.8165137614679, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI116875852, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI224465233, Length=188, Percent_Identity=30.3191489361702, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI90186267, Length=190, Percent_Identity=28.4210526315789, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI87239981, Length=244, Percent_Identity=25.4098360655738, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI116063534, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI18252778, Length=190, Percent_Identity=27.3684210526316, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI157743284, Length=201, Percent_Identity=29.3532338308458, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI110815813, Length=164, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71981389, Length=201, Percent_Identity=27.363184079602, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17542700, Length=201, Percent_Identity=27.363184079602, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI25145251, Length=201, Percent_Identity=27.363184079602, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71981411, Length=201, Percent_Identity=27.363184079602, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71981414, Length=201, Percent_Identity=27.363184079602, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71985677, Length=243, Percent_Identity=23.8683127572016, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI212645194, Length=248, Percent_Identity=26.6129032258064, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161082092, Length=192, Percent_Identity=28.6458333333333, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI161082089, Length=193, Percent_Identity=28.4974093264249, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161082085, Length=193, Percent_Identity=28.4974093264249, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI161082110, Length=193, Percent_Identity=28.4974093264249, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI161082099, Length=193, Percent_Identity=28.4974093264249, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI161082106, Length=193, Percent_Identity=28.4974093264249, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI161082081, Length=193, Percent_Identity=28.4974093264249, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI161082096, Length=193, Percent_Identity=28.4974093264249, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281359521, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI281359519, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28558752, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28558750, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28558756, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28558754, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24639454, Length=143, Percent_Identity=32.8671328671329, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281364453, Length=165, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24581842, Length=165, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45550629, Length=188, Percent_Identity=27.1276595744681, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571867, Length=194, Percent_Identity=28.3505154639175, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571865, Length=194, Percent_Identity=28.3505154639175, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281362676, Length=211, Percent_Identity=28.9099526066351, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI281363919, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45550479, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI28573593, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI221330480, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45551135, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI221330476, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI221330478, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI221330482, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI221330474, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 26053; Mature: 26053

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDGTTALSVALKYKNLPIAEIL
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEEECCCCHHHHH
LSNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPTYCNDHIALLLKYNADVNIENNQG
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCC
NTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHIAVRNKIIDVIQLLIDYGADI
CCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCC
DAKDDNGMTTIDYAAKSGNSDLSVAPPIFKGLSYKLFADKAYISKALFHQLFSSC
CCCCCCCCEEEEEHHCCCCCCCEECCHHHHCCCEEEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDGTTALSVALKYKNLPIAEIL
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEEECCCCHHHHH
LSNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPTYCNDHIALLLKYNADVNIENNQG
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCC
NTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHIAVRNKIIDVIQLLIDYGADI
CCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCC
DAKDDNGMTTIDYAAKSGNSDLSVAPPIFKGLSYKLFADKAYISKALFHQLFSSC
CCCCCCCCEEEEEHHCCCCCCCEECCHHHHCCCEEEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA