| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183922
Identifier: 189183922
GI number: 189183922
Start: 1059104
End: 1060426
Strand: Direct
Name: 189183922
Synonym: OTT_1015
Alternate gene names: NA
Gene position: 1059104-1060426 (Clockwise)
Preceding gene: 189183916
Following gene: 189183923
Centisome position: 52.72
GC content: 27.29
Gene sequence:
>1323_bases ATGCATTTATGGTATCAAATTATACTTAGTGCAAATAATCAAGATTGCAGTTTGAGGTTTATGACCATACCATTTCTAAC ATTAAAAATAGAAAACAGAGATGTAGATAAATTACATAACGTGCCATGTGACACTATAGATCTACAGTCTAGTAGCAGTA GGCATACCGGGTACATACAATTTTCTTCAATTGATAACGTGTTTATATCTCATTTATCTAGGTTTAATGAAATTCGTTAT CTTAATATTTCAGATATAGAGTTATATCTTGCAGGGTTTGATATTTTATCGAATTATTGTAATAATAATTTGACATCATT AACTCTTGTTAATGATAAAATTGGATTAAAGAAAGTGCATAAGCATTGTATTGCCCCTACATCTGGTGCTGATATTCGTA ATCCTATAAAAAAATTGTTAAATAATCTTCCTAACATATCCAAATTAAATATTGGTAATAATTCAATATCGCATGTTGCT ATAAAACAAATCCTTGATTGTATTAATGAAAGTAATAAATTAAATATAATTTTGGATATATCATATAATATGCAAGAATC AAGCAAATCATTTATATCTATCAAACCATTTATTTATCATCTTAAGCAAAATAGCTACAATTTATGGATGAACTCTATGA GAAATTTTATGAAATGTGGTGGTACTTTAATAGTAGAACCTGATGCTTTAGTTTGTCATATTCATCAGGAAACATTAACG TCAAATTTAGGACCAGGGATCTGTACTGATATGCATTTCTCTGATATGCAAATTTTGCATGAAAAAAATATAGATGGCAC TATACCAATAAAAAGATTTATACCGCACAGTAGCCAATTAAACACTCAGGAAGATAATAATAGCGTTTCGAAAAAAGAAT TATGCATAGATAATCAAAATTCTGATTGTACCTACACAGCTAGCACTAGTAGTATAGTGCAAAAAAGTGATGATGATTTA ATAAGTGAATGTTTGGCTAATAATCCTAATATTAAAGAACAAATCAATAATATTCTTTCGGAAACAGAAATTAATAATAT ACTTGCAACAACTTTTTCAACTTCAGAGCTTGATATTAATATAGCTGAAGATTATTTGAGCTATAGTGATAAACAAATTG CCAATAATGATGCTATACAATCAAGCTTCAAGAGAAAAAGAGAAGATATTTACACTGAATTTTCTAATAAAAAAGCAAAT TTCTCTTTAGAAGAGAGTCAAATATTGAACTTGGTAAATCAACATAGTAGTTTAAGTTCTGATTATAATATCAGTTTGTA TGATAGTTATAATAAAAATTTGCATTATGAGTATAATTGCTAA
Upstream 100 bases:
>100_bases TTTTTTCTTTACTGGAATTTTATCTATTTAAATCTTGATTAATATTAATATTTGTTTAATTATCTTCAAAAGTAGAGCAA GTTAATTATGGGGGTGTTTT
Downstream 100 bases:
>100_bases TTGAAGTATTATAATATATCTGATTTATAAACAATAGTATTGATCATGAATTGTCTTATGCAGCAAAAAATTACTCTTCA GCAAAAAAAGGCTAAGCTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MHLWYQIILSANNQDCSLRFMTIPFLTLKIENRDVDKLHNVPCDTIDLQSSSSRHTGYIQFSSIDNVFISHLSRFNEIRY LNISDIELYLAGFDILSNYCNNNLTSLTLVNDKIGLKKVHKHCIAPTSGADIRNPIKKLLNNLPNISKLNIGNNSISHVA IKQILDCINESNKLNIILDISYNMQESSKSFISIKPFIYHLKQNSYNLWMNSMRNFMKCGGTLIVEPDALVCHIHQETLT SNLGPGICTDMHFSDMQILHEKNIDGTIPIKRFIPHSSQLNTQEDNNSVSKKELCIDNQNSDCTYTASTSSIVQKSDDDL ISECLANNPNIKEQINNILSETEINNILATTFSTSELDINIAEDYLSYSDKQIANNDAIQSSFKRKREDIYTEFSNKKAN FSLEESQILNLVNQHSSLSSDYNISLYDSYNKNLHYEYNC
Sequences:
>Translated_440_residues MHLWYQIILSANNQDCSLRFMTIPFLTLKIENRDVDKLHNVPCDTIDLQSSSSRHTGYIQFSSIDNVFISHLSRFNEIRY LNISDIELYLAGFDILSNYCNNNLTSLTLVNDKIGLKKVHKHCIAPTSGADIRNPIKKLLNNLPNISKLNIGNNSISHVA IKQILDCINESNKLNIILDISYNMQESSKSFISIKPFIYHLKQNSYNLWMNSMRNFMKCGGTLIVEPDALVCHIHQETLT SNLGPGICTDMHFSDMQILHEKNIDGTIPIKRFIPHSSQLNTQEDNNSVSKKELCIDNQNSDCTYTASTSSIVQKSDDDL ISECLANNPNIKEQINNILSETEINNILATTFSTSELDINIAEDYLSYSDKQIANNDAIQSSFKRKREDIYTEFSNKKAN FSLEESQILNLVNQHSSLSSDYNISLYDSYNKNLHYEYNC >Mature_440_residues MHLWYQIILSANNQDCSLRFMTIPFLTLKIENRDVDKLHNVPCDTIDLQSSSSRHTGYIQFSSIDNVFISHLSRFNEIRY LNISDIELYLAGFDILSNYCNNNLTSLTLVNDKIGLKKVHKHCIAPTSGADIRNPIKKLLNNLPNISKLNIGNNSISHVA IKQILDCINESNKLNIILDISYNMQESSKSFISIKPFIYHLKQNSYNLWMNSMRNFMKCGGTLIVEPDALVCHIHQETLT SNLGPGICTDMHFSDMQILHEKNIDGTIPIKRFIPHSSQLNTQEDNNSVSKKELCIDNQNSDCTYTASTSSIVQKSDDDL ISECLANNPNIKEQINNILSETEINNILATTFSTSELDINIAEDYLSYSDKQIANNDAIQSSFKRKREDIYTEFSNKKAN FSLEESQILNLVNQHSSLSSDYNISLYDSYNKNLHYEYNC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50170; Mature: 50170
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLWYQIILSANNQDCSLRFMTIPFLTLKIENRDVDKLHNVPCDTIDLQSSSSRHTGYIQ CCEEEEEEEECCCCCCEEEEEEEEEEEEEECCCCHHHHHCCCCCEEECCCCCCCCEEEEE FSSIDNVFISHLSRFNEIRYLNISDIELYLAGFDILSNYCNNNLTSLTLVNDKIGLKKVH ECCHHHHHHHHHHHHCCEEEEEECCEEEEEHHHHHHHHHHCCCCEEEEEECCCCCHHHHH KHCIAPTSGADIRNPIKKLLNNLPNISKLNIGNNSISHVAIKQILDCINESNKLNIILDI HHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEE SYNMQESSKSFISIKPFIYHLKQNSYNLWMNSMRNFMKCGGTLIVEPDALVCHIHQETLT ECCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCEEEEEEEHHHHH SNLGPGICTDMHFSDMQILHEKNIDGTIPIKRFIPHSSQLNTQEDNNSVSKKELCIDNQN CCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHEECCCC SDCTYTASTSSIVQKSDDDLISECLANNPNIKEQINNILSETEINNILATTFSTSELDIN CCEEEEECCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEE IAEDYLSYSDKQIANNDAIQSSFKRKREDIYTEFSNKKANFSLEESQILNLVNQHSSLSS EHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC DYNISLYDSYNKNLHYEYNC CCEEEEEECCCCCEEEEECC >Mature Secondary Structure MHLWYQIILSANNQDCSLRFMTIPFLTLKIENRDVDKLHNVPCDTIDLQSSSSRHTGYIQ CCEEEEEEEECCCCCCEEEEEEEEEEEEEECCCCHHHHHCCCCCEEECCCCCCCCEEEEE FSSIDNVFISHLSRFNEIRYLNISDIELYLAGFDILSNYCNNNLTSLTLVNDKIGLKKVH ECCHHHHHHHHHHHHCCEEEEEECCEEEEEHHHHHHHHHHCCCCEEEEEECCCCCHHHHH KHCIAPTSGADIRNPIKKLLNNLPNISKLNIGNNSISHVAIKQILDCINESNKLNIILDI HHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEE SYNMQESSKSFISIKPFIYHLKQNSYNLWMNSMRNFMKCGGTLIVEPDALVCHIHQETLT ECCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCEEEEEEEHHHHH SNLGPGICTDMHFSDMQILHEKNIDGTIPIKRFIPHSSQLNTQEDNNSVSKKELCIDNQN CCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHEECCCC SDCTYTASTSSIVQKSDDDLISECLANNPNIKEQINNILSETEINNILATTFSTSELDIN CCEEEEECCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEE IAEDYLSYSDKQIANNDAIQSSFKRKREDIYTEFSNKKANFSLEESQILNLVNQHSSLSS EHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC DYNISLYDSYNKNLHYEYNC CCEEEEEECCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA