| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189183844
Identifier: 189183844
GI number: 189183844
Start: 977389
End: 977853
Strand: Reverse
Name: 189183844
Synonym: OTT_0937
Alternate gene names: NA
Gene position: 977853-977389 (Counterclockwise)
Preceding gene: 189183845
Following gene: 189183835
Centisome position: 48.67
GC content: 30.32
Gene sequence:
>465_bases ATGAGTATTAGAGTTTTGAGATTTATGATAGGGCTTATTGCTTTAGTCAAGTTTAGTGATGTATATGCGGTAGAATATGG ATTAGAAGCTGATAATTTACTAAAGCTTGAGATTTCTGATAGTGGGCCAACAAGAATTAATCTTAAAGATGAAAAAATTA ATGATATTTTTATGTACCCTCAAAATGCAGCTGAAGTTGTAGTTCATGAGTCTGGATTTTTGTTTATTGCTCCACGAGAA GAAGGAAACAAGCTTTATTTAACGGTAATAGGAGAATACAAAACAATTCAAGATTTAATGTTAACTTTTACTCCAAAAAC TCCAAACCCTGTAATGCTTGTTAATGCTGCTACAAAAATAGAGGAAAAGGATAATTCAAAACAAAACAATGCCAATTTGT TCAGTAATGACGTTAATACAAAAGAATTAACAGCAAAACTTTCTAATTTTACCTGTGATAATTAG
Upstream 100 bases:
>100_bases GTAAACATATAGCTGTCGATAAGACTTACCTTTTGACTTACAAGCGAACTCCTAATTACCTTTTATTGTTGACTGGTGTT AAAGAGAATGGAATAAAAAA
Downstream 100 bases:
>100_bases TTTTTATATATGAATTTCTTACTCATGCTAAGTTTCATGTTATTTCAGTATTTATTTCAAATATCAATTCTTGAACAGTC TCTTATCATTTGTGTTACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MSIRVLRFMIGLIALVKFSDVYAVEYGLEADNLLKLEISDSGPTRINLKDEKINDIFMYPQNAAEVVVHESGFLFIAPRE EGNKLYLTVIGEYKTIQDLMLTFTPKTPNPVMLVNAATKIEEKDNSKQNNANLFSNDVNTKELTAKLSNFTCDN
Sequences:
>Translated_154_residues MSIRVLRFMIGLIALVKFSDVYAVEYGLEADNLLKLEISDSGPTRINLKDEKINDIFMYPQNAAEVVVHESGFLFIAPRE EGNKLYLTVIGEYKTIQDLMLTFTPKTPNPVMLVNAATKIEEKDNSKQNNANLFSNDVNTKELTAKLSNFTCDN >Mature_153_residues SIRVLRFMIGLIALVKFSDVYAVEYGLEADNLLKLEISDSGPTRINLKDEKINDIFMYPQNAAEVVVHESGFLFIAPREE GNKLYLTVIGEYKTIQDLMLTFTPKTPNPVMLVNAATKIEEKDNSKQNNANLFSNDVNTKELTAKLSNFTCDN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17354; Mature: 17223
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRVLRFMIGLIALVKFSDVYAVEYGLEADNLLKLEISDSGPTRINLKDEKINDIFMYP CCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECC QNAAEVVVHESGFLFIAPREEGNKLYLTVIGEYKTIQDLMLTFTPKTPNPVMLVNAATKI CCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCC EEKDNSKQNNANLFSNDVNTKELTAKLSNFTCDN CCCCCCCCCCCCEECCCCCHHHHHEECCCCCCCC >Mature Secondary Structure SIRVLRFMIGLIALVKFSDVYAVEYGLEADNLLKLEISDSGPTRINLKDEKINDIFMYP CHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECC QNAAEVVVHESGFLFIAPREEGNKLYLTVIGEYKTIQDLMLTFTPKTPNPVMLVNAATKI CCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCC EEKDNSKQNNANLFSNDVNTKELTAKLSNFTCDN CCCCCCCCCCCCEECCCCCHHHHHEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA