| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183804
Identifier: 189183804
GI number: 189183804
Start: 939029
End: 939832
Strand: Reverse
Name: 189183804
Synonym: OTT_0897
Alternate gene names: NA
Gene position: 939832-939029 (Counterclockwise)
Preceding gene: 189183805
Following gene: 189183803
Centisome position: 46.78
GC content: 25.75
Gene sequence:
>804_bases ATGCGTATTTTTTCTGATGAATTTGCTAATAAGATTAATAATTCAAATAATATTGACTTTTGTTATAAAATTACTTTATT CTCTGGAGAGAAATTATATTTAACTTCAGCTCCTACATCAATTTTGCTTGGTAAGAATCTATATTTGCCTAACTCAGGGT TAGTAATAAATAGCATTAACCTAAATGATTCAGGAGAGGCTATAGCGGAAATTGAAGGAATTTTTGAAAAACAAGGTATA ACGTATGACCATATTCTTCATAATTTGAAAATTGAAATATTAATTACTGTTGATCAAACATCTTATAATGATTTTTTTAC TTTCTATTGTATTGAGGTTAATCATGATACAGTTAAATTTTGCCTTTCTTTATCATCAATTAGTATTAAGCTATACCAAA CTATATTAAAAACATATAGCAAAAGTTGCAGAGCAAATTTAGGAGATAAATATTGTAAAATTAATACCGATCAGTATACA AAATCTTATAAAGTTCAGAATATTCAAGCTAACGATATTATAGTTATTGACTGTTGTCCACAAGCTGTAAACTATGCTTA TGGCAAGGCTATATTTTCTCCTCAACATAAATTTAACATTGTTAAGCATTATAACACTCCATTAATGAATAATAATAGTA TTATTGAAACCAGTATTACTATTCCTGAATTTTTACATAATACTTCAGAAATTAAATTAACTATAGGATGCGATAAAACT TTTAACAACTGTATTCAAAAATTCAACAATGCAATAAATTTCCGCGGAGAACCTTTTATTGATACTCTTAAAACTTTTAA ATAA
Upstream 100 bases:
>100_bases GCGCTTCAATAATGACTCCTTAGTCTATAGTGTTAATTCAGATCAAACAATTATAATAAGTAATCTTGAATTAATTGAAG TCATATAAAAGTTGGTAATT
Downstream 100 bases:
>100_bases AACAATAGTTAATTATGTACTTTTTTAGTCTAGTTATATACAATAAATTGATTCTCAAAATATAATTTTATTCTAAAAAT TTATAAGAATAGTCGATATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MRIFSDEFANKINNSNNIDFCYKITLFSGEKLYLTSAPTSILLGKNLYLPNSGLVINSINLNDSGEAIAEIEGIFEKQGI TYDHILHNLKIEILITVDQTSYNDFFTFYCIEVNHDTVKFCLSLSSISIKLYQTILKTYSKSCRANLGDKYCKINTDQYT KSYKVQNIQANDIIVIDCCPQAVNYAYGKAIFSPQHKFNIVKHYNTPLMNNNSIIETSITIPEFLHNTSEIKLTIGCDKT FNNCIQKFNNAINFRGEPFIDTLKTFK
Sequences:
>Translated_267_residues MRIFSDEFANKINNSNNIDFCYKITLFSGEKLYLTSAPTSILLGKNLYLPNSGLVINSINLNDSGEAIAEIEGIFEKQGI TYDHILHNLKIEILITVDQTSYNDFFTFYCIEVNHDTVKFCLSLSSISIKLYQTILKTYSKSCRANLGDKYCKINTDQYT KSYKVQNIQANDIIVIDCCPQAVNYAYGKAIFSPQHKFNIVKHYNTPLMNNNSIIETSITIPEFLHNTSEIKLTIGCDKT FNNCIQKFNNAINFRGEPFIDTLKTFK >Mature_267_residues MRIFSDEFANKINNSNNIDFCYKITLFSGEKLYLTSAPTSILLGKNLYLPNSGLVINSINLNDSGEAIAEIEGIFEKQGI TYDHILHNLKIEILITVDQTSYNDFFTFYCIEVNHDTVKFCLSLSSISIKLYQTILKTYSKSCRANLGDKYCKINTDQYT KSYKVQNIQANDIIVIDCCPQAVNYAYGKAIFSPQHKFNIVKHYNTPLMNNNSIIETSITIPEFLHNTSEIKLTIGCDKT FNNCIQKFNNAINFRGEPFIDTLKTFK
Specific function: Unknown
COG id: COG5449
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30469; Mature: 30469
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIFSDEFANKINNSNNIDFCYKITLFSGEKLYLTSAPTSILLGKNLYLPNSGLVINSIN CCCCCHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCCCEEEECCEEECCCCCEEEEEEC LNDSGEAIAEIEGIFEKQGITYDHILHNLKIEILITVDQTSYNDFFTFYCIEVNHDTVKF CCCCCCHHHHHHHHHHHCCCCHHHHHHCEEEEEEEEEECCCCCCEEEEEEEEECCCCEEE CLSLSSISIKLYQTILKTYSKSCRANLGDKYCKINTDQYTKSYKVQNIQANDIIVIDCCP EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHCCEEEEEEECCCCEEEEECCC QAVNYAYGKAIFSPQHKFNIVKHYNTPLMNNNSIIETSITIPEFLHNTSEIKLTIGCDKT HHHHHHHHHEEECCCHHEEEEEECCCCCCCCCCEEEEECCCHHHHCCCCEEEEEEECCHH FNNCIQKFNNAINFRGEPFIDTLKTFK HHHHHHHHCCCCCCCCCCHHHHHHHCC >Mature Secondary Structure MRIFSDEFANKINNSNNIDFCYKITLFSGEKLYLTSAPTSILLGKNLYLPNSGLVINSIN CCCCCHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCCCEEEECCEEECCCCCEEEEEEC LNDSGEAIAEIEGIFEKQGITYDHILHNLKIEILITVDQTSYNDFFTFYCIEVNHDTVKF CCCCCCHHHHHHHHHHHCCCCHHHHHHCEEEEEEEEEECCCCCCEEEEEEEEECCCCEEE CLSLSSISIKLYQTILKTYSKSCRANLGDKYCKINTDQYTKSYKVQNIQANDIIVIDCCP EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHCCEEEEEEECCCCEEEEECCC QAVNYAYGKAIFSPQHKFNIVKHYNTPLMNNNSIIETSITIPEFLHNTSEIKLTIGCDKT HHHHHHHHHEEECCCHHEEEEEECCCCCCCCCCEEEEECCCHHHHCCCCEEEEEEECCHH FNNCIQKFNNAINFRGEPFIDTLKTFK HHHHHHHHCCCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA