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The map label for this gene is fimB [C]

Identifier: 189183708

GI number: 189183708

Start: 845428

End: 845853

Strand: Reverse

Name: fimB [C]

Synonym: OTT_0801

Alternate gene names: 189183708

Gene position: 845853-845428 (Counterclockwise)

Preceding gene: 189183709

Following gene: 189183707

Centisome position: 42.1

GC content: 27.7

Gene sequence:

>426_bases
ATGCGTTGGCAAAATATAAAACTGAAAGAAGGAGTATTGTATATATCAAAAACTAAGAATTGTGAATCACAAACAGTGCC
ATTAATAAATTTATTAATAGAAAAATTAAAACAGTATCCATATTCATTAGAAAGTGAATGGGTGTTTCCTGGACAAAGAG
AAAATAGTAGACATTTAAAGAACATAAATGTAGCATGGAAAAAAGCTCATAAAAGGGCTAGATTAAAAAATTTAAGGATA
CACGATCTTAGAAGAACTGTTGGTAGTTGGATGGCAAATTTTGAAATATCAATAACTATAATTGGCAAAGTGTTAAATCA
TAATGACTCTCAATCAACAAAATTTTATACACATCTTAATACATATGTTGTACGATATGCAATACAAAAATTTGCTAACG
AAATTGATAAGTGCTCCAATTTATGA

Upstream 100 bases:

>100_bases
TTGCACTATATTTACATTTCTAATATTCAAAAAGAAGATATTTAATAATGCAAATAAAGGTGGTAAATATTCAGCAGCCC
GTAGAAATAATGTACTATCA

Downstream 100 bases:

>100_bases
GACTAAACATGAAGAATTTAACAATTAATGATGATGCACCAGACTTTAATATGATTACTACTAGTAATTCAATTATAAAT
CTAGGTCATTACGAAGGTAA

Product: putative integrase

Products: NA

Alternate protein names: Integrase Family Protein; Phage-Related Integrase; Phage Integrase Family Protein; Phage Integrase

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRWQNIKLKEGVLYISKTKNCESQTVPLINLLIEKLKQYPYSLESEWVFPGQRENSRHLKNINVAWKKAHKRARLKNLRI
HDLRRTVGSWMANFEISITIIGKVLNHNDSQSTKFYTHLNTYVVRYAIQKFANEIDKCSNL

Sequences:

>Translated_141_residues
MRWQNIKLKEGVLYISKTKNCESQTVPLINLLIEKLKQYPYSLESEWVFPGQRENSRHLKNINVAWKKAHKRARLKNLRI
HDLRRTVGSWMANFEISITIIGKVLNHNDSQSTKFYTHLNTYVVRYAIQKFANEIDKCSNL
>Mature_141_residues
MRWQNIKLKEGVLYISKTKNCESQTVPLINLLIEKLKQYPYSLESEWVFPGQRENSRHLKNINVAWKKAHKRARLKNLRI
HDLRRTVGSWMANFEISITIIGKVLNHNDSQSTKFYTHLNTYVVRYAIQKFANEIDKCSNL

Specific function: Fimb Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fimb Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16704; Mature: 16704

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWQNIKLKEGVLYISKTKNCESQTVPLINLLIEKLKQYPYSLESEWVFPGQRENSRHLK
CCCCCCEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
NINVAWKKAHKRARLKNLRIHDLRRTVGSWMANFEISITIIGKVLNHNDSQSTKFYTHLN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEEHHHCCCCCCCHHHHHHHH
TYVVRYAIQKFANEIDKCSNL
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRWQNIKLKEGVLYISKTKNCESQTVPLINLLIEKLKQYPYSLESEWVFPGQRENSRHLK
CCCCCCEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
NINVAWKKAHKRARLKNLRIHDLRRTVGSWMANFEISITIIGKVLNHNDSQSTKFYTHLN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEEHHHCCCCCCCHHHHHHHH
TYVVRYAIQKFANEIDKCSNL
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA