| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189183565
Identifier: 189183565
GI number: 189183565
Start: 689191
End: 689598
Strand: Reverse
Name: 189183565
Synonym: OTT_0658
Alternate gene names: NA
Gene position: 689598-689191 (Counterclockwise)
Preceding gene: 189183568
Following gene: 189183564
Centisome position: 34.33
GC content: 31.13
Gene sequence:
>408_bases TTGCCATTATTTATCTATTATTTTTTATACTCTTTTCATATTAGCATATTATGTACCCATTTCCTACGTTCGTGCTATAG CTCAAATGTAAATAATTTAAAGTATTATCAGCCATTTCAAGGAGAAAAGATTCTTATAGCTGCAAATAATGATAAACAAA ATAAAGAATATGTAAGCACTATAAACGAGGCTGTAAAAGTACTGACAAGCAAAGGAGCAATTACTAGCATCGTAATTCAT TCAGAAGGTGAAGATTTTAACGAAATGCTAAAAAATAAAGGAGCCACAGCTGTTAAGGAGCTTATGATACCTGAAATCAT GAAGTTAATTAATACTCAGAACGTAAAAACAGAGTCTAAACAAGTGGTGAAAACTAACATAGCTCCAAAAATTGGAGTTA GACGGTAG
Upstream 100 bases:
>100_bases GTATTACGACTTATATTGAATATTTTACATGCTTTAACAATTGATAGCCCCTCATCTAGGGCTTTGAATAGCTTCATTCT TAAATCGTAACTGTAACTTC
Downstream 100 bases:
>100_bases TGCTGAAGATTTGAAATTGAATGTAAGCTATTCATTCACAGAGCAAATTACAAAATGAGCTATACATAAACAGCTCACAG TGATGTTTGTAATTCGCATT
Product: putative conjugative transfer protein TraA
Products: NA
Alternate protein names: MobA/MobL Family Protein; Conjugal Transfer Protein TraA; Conjugative Transfer Protein TraI
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MPLFIYYFLYSFHISILCTHFLRSCYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIH SEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNVKTESKQVVKTNIAPKIGVRR
Sequences:
>Translated_135_residues MPLFIYYFLYSFHISILCTHFLRSCYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIH SEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNVKTESKQVVKTNIAPKIGVRR >Mature_134_residues PLFIYYFLYSFHISILCTHFLRSCYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHS EGEDFNEMLKNKGATAVKELMIPEIMKLINTQNVKTESKQVVKTNIAPKIGVRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15409; Mature: 15278
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLFIYYFLYSFHISILCTHFLRSCYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVST CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCHHHHHHH INEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNVKTESK HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHH QVVKTNIAPKIGVRR HHHHHCCCCCCCCCC >Mature Secondary Structure PLFIYYFLYSFHISILCTHFLRSCYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVST CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCHHHHHHH INEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNVKTESK HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHH QVVKTNIAPKIGVRR HHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA