| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is gidB [H]
Identifier: 189183333
GI number: 189183333
Start: 442791
End: 443387
Strand: Reverse
Name: gidB [H]
Synonym: OTT_0426
Alternate gene names: 189183333
Gene position: 443387-442791 (Counterclockwise)
Preceding gene: 189183336
Following gene: 189183332
Centisome position: 22.07
GC content: 24.96
Gene sequence:
>597_bases ATGCTTCAGCAAATATATGATTTTTTAAATATTAATTATAATGTTTCACGTGAAACATTTAATAAATTTAAAGAGTATTA TTCTCTATTAAGCAAATGGAATTCAACAATTAATTTAGTTTCAGCAACTACTTTACAAAATTTTTGGCAAAGGCACATTT TTGACTCTATACAATTATTAAATTATATTCATAATAAAGATATTATTGTTGCAGATTTAGGTAGTGGGGCTGGATTCCCT GGAGTAGTACTATCTATATCAGGAATAAAAAATGTAATATTAATAGAATCTGATAGTCGCAAAGCTGCTTTTTTACTACA AGTAGCTCAATTATCTGATCAAAAAATTGAAATTATAAATGATAGAATACAAAATCTAAAGGTAAAATGTGATATTGTTA CTGTCAGAGCATTAGCAAATTTAAGTACAATATTGTCACATACAAAGCAATTCACGGTTAAAGACAAATATTTAATTTTA AAAGGTAAAAATTATCAGCATGAGATCACTCAAGCATTATTACATAATAAATTTAATTATAGGCTATATAAAAGTTGCAC TGATGATAGTTCATGGATACTAGAAATTAAAATATAA
Upstream 100 bases:
>100_bases ATAATGTTTCACGTGAAACATTATTTATAATATGATATTCATTATAATTTCTAGAAAATAACTTTGCCATTAATTAATAG ATAATTTTAGTAACATAAGT
Downstream 100 bases:
>100_bases CAATCAATGAATTACAACGCACAAATTATAGTTATTGTTAATCAAAAAGGTGGTGTAGGTAAAACTACTACTGCTACTAA CTTAGCTACAGCATTTGCTG
Product: 16S rRNA methyltransferase GidB
Products: NA
Alternate protein names: 16S rRNA 7-methylguanosine methyltransferase; 16S rRNA m7G methyltransferase [H]
Number of amino acids: Translated: 198; Mature: 198
Protein sequence:
>198_residues MLQQIYDFLNINYNVSRETFNKFKEYYSLLSKWNSTINLVSATTLQNFWQRHIFDSIQLLNYIHNKDIIVADLGSGAGFP GVVLSISGIKNVILIESDSRKAAFLLQVAQLSDQKIEIINDRIQNLKVKCDIVTVRALANLSTILSHTKQFTVKDKYLIL KGKNYQHEITQALLHNKFNYRLYKSCTDDSSWILEIKI
Sequences:
>Translated_198_residues MLQQIYDFLNINYNVSRETFNKFKEYYSLLSKWNSTINLVSATTLQNFWQRHIFDSIQLLNYIHNKDIIVADLGSGAGFP GVVLSISGIKNVILIESDSRKAAFLLQVAQLSDQKIEIINDRIQNLKVKCDIVTVRALANLSTILSHTKQFTVKDKYLIL KGKNYQHEITQALLHNKFNYRLYKSCTDDSSWILEIKI >Mature_198_residues MLQQIYDFLNINYNVSRETFNKFKEYYSLLSKWNSTINLVSATTLQNFWQRHIFDSIQLLNYIHNKDIIVADLGSGAGFP GVVLSISGIKNVILIESDSRKAAFLLQVAQLSDQKIEIINDRIQNLKVKCDIVTVRALANLSTILSHTKQFTVKDKYLIL KGKNYQHEITQALLHNKFNYRLYKSCTDDSSWILEIKI
Specific function: Specifically methylates the N7 position of guanosine in position 527 of 16S rRNA [H]
COG id: COG0357
COG function: function code M; Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. RNA methyltransferase rsmG family [H]
Homologues:
Organism=Escherichia coli, GI1790179, Length=163, Percent_Identity=31.2883435582822, Blast_Score=71, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003682 [H]
Pfam domain/function: PF02527 GidB [H]
EC number: =2.1.1.170 [H]
Molecular weight: Translated: 22893; Mature: 22893
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQQIYDFLNINYNVSRETFNKFKEYYSLLSKWNSTINLVSATTLQNFWQRHIFDSIQLL CHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHH NYIHNKDIIVADLGSGAGFPGVVLSISGIKNVILIESDSRKAAFLLQVAQLSDQKIEIIN HHHCCCCEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHH DRIQNLKVKCDIVTVRALANLSTILSHTKQFTVKDKYLILKGKNYQHEITQALLHNKFNY HHHHCEEEEEEEEEHHHHHHHHHHHHHHHCEEEECEEEEEECCCCHHHHHHHHHHCCCCE RLYKSCTDDSSWILEIKI EEEECCCCCCCEEEEEEC >Mature Secondary Structure MLQQIYDFLNINYNVSRETFNKFKEYYSLLSKWNSTINLVSATTLQNFWQRHIFDSIQLL CHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHH NYIHNKDIIVADLGSGAGFPGVVLSISGIKNVILIESDSRKAAFLLQVAQLSDQKIEIIN HHHCCCCEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHH DRIQNLKVKCDIVTVRALANLSTILSHTKQFTVKDKYLILKGKNYQHEITQALLHNKFNY HHHHCEEEEEEEEEHHHHHHHHHHHHHHHCEEEECEEEEEECCCCHHHHHHHHHHCCCCE RLYKSCTDDSSWILEIKI EEEECCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA