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The map label for this gene is traB [H]

Identifier: 189183322

GI number: 189183322

Start: 435300

End: 436628

Strand: Reverse

Name: traB [H]

Synonym: OTT_0415

Alternate gene names: 189183322

Gene position: 436628-435300 (Counterclockwise)

Preceding gene: 189183323

Following gene: 189183321

Centisome position: 21.73

GC content: 35.52

Gene sequence:

>1329_bases
GTGCAACAGGACAATTCAGACAATAATAATACAAAAGAAGAGGATTTAGAGCTAAATGATAAACTAAAGGCTGAATCTGG
TGTTAGGTCTAATAGCAAGTTATCAGAATTAGCAAGTATTATTCGCCTAAAGCAAGTAATTGCCTTAATTTTTATAAGCA
TCACAATAATGCTTGTTTCGTATTTTTTATCTGAAAGCGGTAAAACGGAAGACTCTATAGCTTTTACAGAAAATAGTGAG
TCAAGAAAAGCAATTTCTGGAGTAGAACAAGTTGTAGACTTAAGAGCAAAATGGACAGAGGAAATACTTAGTAAAGTCAA
AACATTAAAAGATAGATTTGAAAGTGTAATAGACAGCAGATATTTAGAAATTACAGCCCAAATTAATAATTTTAACCAAA
AACTTGAGATATTGGAGAATCAGCCTAAGCAGAGTCTATATAATAATGATAGTGATGAATTTAGTTCTGATCTTAATCAT
CATATTTTAAATTCACCACATGATAACAAAACAGAGCAAGCTCCTGTAGTAGTAAAGCCTTATGTAAATCTTAGGAGAGC
TGGATCTGAGCCAAAAAAAAATGTTGAGAACTATGTTACTAGCGGTAGTTCTGCTAGAGCTGTCCTGCTTATTGAAGTCG
TTGTAGGCACAGGAACAAACAGCTCTTCATCACCAGAACCAATTGTTCTGCAGCTATTAGATACAGCTATTCTTTATGAT
GAATATAAAACTGATCAAATCAAAAAGGCAATTTTAATTGGATCCTGTAACGGAGAGATGTCCTCAGAGAGAGCTAAATG
TCGCATCGAAACTCTTTCAGTAGTCAATAACCAAGGAGATATTATCGAGAAAAAGGTGGAAGGCTGGTTGATAGGTGAAG
ATGGACGTTCTGGAATTAAAGGAATCGTGGTAGATAAATCGTCTAACATAGCAGGCATGGCTGCATTAAATGGAGTATTT
AGCAGTATAGCTAAGTTTCTGCAATCTAAGGCTATTAAACCTGATATGCTACCAACTTTAAACCTAGTAGCTGGAGGCCA
ACAACAAGAGTTTCAGATTGGAGATGCGCTTCAGTCTGGAGCTTACGCTGGAGCTAGCAATGCTTTTGATAAGCTAGCTG
ATTTTGCTATAAAACGAGCTGATTCTATGAGCCCGGTCGTTCTTATTGCGTCAGGTAGAGTCATCGATGTTGTATTTAAA
AAAGGGTTTGACTTATGCGAGCACAAGAAGAAGCCACATAATTTAACTTATTCACCATCAACTAGCCATGAAAAAGTTAA
TTTGCATAATAAATTCGATCAATCACAAAAGTTAGAGGAGCATTTATAA

Upstream 100 bases:

>100_bases
AGCAATTGGTGTTATTTTAGGCTTTTACCTAGTGAATTGCCAGTGGTATGAAAATTAATTGATAAGGTAGAAACATTAAC
ATTCAAAAAGCGGAGGAATA

Downstream 100 bases:

>100_bases
TGAAGTTTTTATTATTGCTATTGGGCTGTATGAGCCTAACCAGCTTCTTTTTTGAAAGTACTTTTGATTGTAAAATTCCT
AAAGGGCTAAAATGTAAGTC

Product: putative conjugative transfer protein TraB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MQQDNSDNNNTKEEDLELNDKLKAESGVRSNSKLSELASIIRLKQVIALIFISITIMLVSYFLSESGKTEDSIAFTENSE
SRKAISGVEQVVDLRAKWTEEILSKVKTLKDRFESVIDSRYLEITAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNH
HILNSPHDNKTEQAPVVVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYD
EYKTDQIKKAILIGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVF
SSIAKFLQSKAIKPDMLPTLNLVAGGQQQEFQIGDALQSGAYAGASNAFDKLADFAIKRADSMSPVVLIASGRVIDVVFK
KGFDLCEHKKKPHNLTYSPSTSHEKVNLHNKFDQSQKLEEHL

Sequences:

>Translated_442_residues
MQQDNSDNNNTKEEDLELNDKLKAESGVRSNSKLSELASIIRLKQVIALIFISITIMLVSYFLSESGKTEDSIAFTENSE
SRKAISGVEQVVDLRAKWTEEILSKVKTLKDRFESVIDSRYLEITAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNH
HILNSPHDNKTEQAPVVVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYD
EYKTDQIKKAILIGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVF
SSIAKFLQSKAIKPDMLPTLNLVAGGQQQEFQIGDALQSGAYAGASNAFDKLADFAIKRADSMSPVVLIASGRVIDVVFK
KGFDLCEHKKKPHNLTYSPSTSHEKVNLHNKFDQSQKLEEHL
>Mature_442_residues
MQQDNSDNNNTKEEDLELNDKLKAESGVRSNSKLSELASIIRLKQVIALIFISITIMLVSYFLSESGKTEDSIAFTENSE
SRKAISGVEQVVDLRAKWTEEILSKVKTLKDRFESVIDSRYLEITAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNH
HILNSPHDNKTEQAPVVVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYD
EYKTDQIKKAILIGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVF
SSIAKFLQSKAIKPDMLPTLNLVAGGQQQEFQIGDALQSGAYAGASNAFDKLADFAIKRADSMSPVVLIASGRVIDVVFK
KGFDLCEHKKKPHNLTYSPSTSHEKVNLHNKFDQSQKLEEHL

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 48780; Mature: 48780

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQDNSDNNNTKEEDLELNDKLKAESGVRSNSKLSELASIIRLKQVIALIFISITIMLVS
CCCCCCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLSESGKTEDSIAFTENSESRKAISGVEQVVDLRAKWTEEILSKVKTLKDRFESVIDSR
HHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
YLEITAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNHHILNSPHDNKTEQAPVVVKP
HEEEEEEHHCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
YVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYD
CHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
EYKTDQIKKAILIGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIK
HHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCEEECCCCCCCCC
GIVVDKSSNIAGMAALNGVFSSIAKFLQSKAIKPDMLPTLNLVAGGQQQEFQIGDALQSG
EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHC
AYAGASNAFDKLADFAIKRADSMSPVVLIASGRVIDVVFKKGFDLCEHKKKPHNLTYSPS
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEHHHHCCCHHHHCCCCCCCCCCCCC
TSHEKVNLHNKFDQSQKLEEHL
CCCCEEECHHHCCHHHHHHHCC
>Mature Secondary Structure
MQQDNSDNNNTKEEDLELNDKLKAESGVRSNSKLSELASIIRLKQVIALIFISITIMLVS
CCCCCCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLSESGKTEDSIAFTENSESRKAISGVEQVVDLRAKWTEEILSKVKTLKDRFESVIDSR
HHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
YLEITAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNHHILNSPHDNKTEQAPVVVKP
HEEEEEEHHCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
YVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYD
CHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
EYKTDQIKKAILIGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIK
HHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCEEECCCCCCCCC
GIVVDKSSNIAGMAALNGVFSSIAKFLQSKAIKPDMLPTLNLVAGGQQQEFQIGDALQSG
EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHC
AYAGASNAFDKLADFAIKRADSMSPVVLIASGRVIDVVFKKGFDLCEHKKKPHNLTYSPS
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEHHHHCCCHHHHCCCCCCCCCCCCC
TSHEKVNLHNKFDQSQKLEEHL
CCCCEEECHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]