Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 189183215

GI number: 189183215

Start: 322562

End: 322948

Strand: Direct

Name: xerD [C]

Synonym: OTT_0308

Alternate gene names: 189183215

Gene position: 322562-322948 (Clockwise)

Preceding gene: 189183214

Following gene: 189183216

Centisome position: 16.06

GC content: 32.56

Gene sequence:

>387_bases
ATGGTATTGCCAAGCCCAATAGATAATAGCAAACACTGGTTAAATGAGACAATACAATGTGCATGGGATAAAATTCGCAA
AAAAGCTAGAATACCGAATGTAACAATACATGATCTTAGAAGAACGTTTGCAACTTGGTCGATAAATAATGGAGAAGAAC
TACGGACAATAGCTGAAATGTTAGGGCATAGTCGTATTTCAACAACAGCTGAAATTTATACTAAAATTAGTGTAGAAAAG
GTAAAAGCCGCTACAAATAAAGTTGTAAACAATATATTAACAAGTGATAATGCTAATACTGAACTAGACAAGATAATACC
TGAAATCTTAGCATCATTAGGTCGCAAAGAAGAAAGACAGATAATAAACAGCTTATCTGAGAAATAA

Upstream 100 bases:

>100_bases
TACCAAAAACTAAGAGTAAAAGTGGAAAGACACTATATATAGGATTAGCTGATGCATTAATAACAATATTGAAATACCTA
AAGCAAGAAACAAATAGTGA

Downstream 100 bases:

>100_bases
GGCTTGATATATTAGATAGATTTTGTAAATTTTTGAAAATCACAGTAGTAGAATGAAAAATCTCATGCTACAATTGCGGC
TAAAGGTGATTATGCAAAAT

Product: putative integrase

Products: NA

Alternate protein names: Phage-Related Integrase; Phage Integrase Family Protein

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEK
VKAATNKVVNNILTSDNANTELDKIIPEILASLGRKEERQIINSLSEK

Sequences:

>Translated_128_residues
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEK
VKAATNKVVNNILTSDNANTELDKIIPEILASLGRKEERQIINSLSEK
>Mature_128_residues
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEK
VKAATNKVVNNILTSDNANTELDKIIPEILASLGRKEERQIINSLSEK

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14550; Mature: 14550

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
LGHSRISTTAEIYTKISVEKVKAATNKVVNNILTSDNANTELDKIIPEILASLGRKEERQ
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
IINSLSEK
HHHHHCCC
>Mature Secondary Structure
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
LGHSRISTTAEIYTKISVEKVKAATNKVVNNILTSDNANTELDKIIPEILASLGRKEERQ
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
IINSLSEK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA