| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is traC [H]
Identifier: 189183007
GI number: 189183007
Start: 97372
End: 99453
Strand: Direct
Name: traC [H]
Synonym: OTT_0100
Alternate gene names: 189183007
Gene position: 97372-99453 (Clockwise)
Preceding gene: 189183006
Following gene: 189183008
Centisome position: 4.85
GC content: 35.35
Gene sequence:
>2082_bases TTGTTAATAAGTCGCCGAAAAAACCAAAAAAATATCTTATTAATTTATTTAAATCAAAACAGAGTCAAGGTGAACGCAAG CATACATAAGGATTTTGATCGAGAAAGATTTTCTAAACACTTTGTCTATGAATCATATGATGATGAGACTCAGCTATTCT TTAATCGTTGTTCAATAGGCTTTGTATTGCTTGCATGCCCATTGGCTGAAGCTAGTGTTTCGGCTCAAAATGAAATTGCT GAATTTCTGAAAAGCGATGAAAATTTACCTGCTGAAAGTAGCCTTCAAGTATTGATGATTGGTAGTAATAATATAGAGAA TTTTTTAAGCAACTGGCAGTCATATCGTAAAGGAGAGATATTTATTGAGTTAGCAAATAAAAGAACAGAGTTTTTGCGTG ATCAAGCTCAAAAAGTAGGTTCTATAAAGGATGTAGTATTGTTAATTTCAGTTACTATACCTAATTTAAATGCAAATATC GATGATATGATTCGCAGACGAGATGCTTTAAAAGATACGTTTAGGTCAATTGGATTAAGCACTGAAAATGTGAATGCGCA GCAATTATTAAAGTTTCTGAGAGTAATATTTGGCTGGCCTGAAGAAGAACATTCAAATATTAACCAGTATGAAATATTGT CTGAACAAATTCTAAGTGGAGATTTTTCGTTATTTGAGAATGATGATTGTGTAAATGTAAATGATGATCAAATATTTATC AGTCTAGAAGCAAGAAAGAGGCCTGCAGAGTGGAAATTATCTGCTATGGATCTGTTTTTAGGTAATGAAATGCGTCGTGA TGAATATATAAAATCAAATTTCCTGATTCATTTTGGTCTGCAAATTTTACCAAATCAAGCGATGGAAAGGACTGCTGCCA TAACTAAAAGAGAAGCGCTAGAAAGAAATATTAATGCGGGAATGGGTAAATTTTTTCCTGACATACAACAAGAAGCTGCT GATTTAGCTGGTGTAGTAGCTGCTTTACAGAGTGGTGATAGAGTCGTTAATATTCACTTCAATGTTATTATGTTTGACAA AATAAAAAAAGCTAAGCAATCTGCATCGGCCTTTTGTTCGATGTTAAGGCGCAGTGGATGGTATTTTGTGCCATGTAAAT ATGATCATGTGGCCGTGTTACTAGCTGCACTACCAATGCAATTAGTTGAACAAGGCCCAAAAGGTATATTGGGTCAAAAA ACATCAGGAGTTGGAGTAGCACTTTCTAGCTTAGGTAGAGGCATAAAAACTGTTTCTGTAGAGAGTAAAGTATTATTGCC AATCATTGGTGAATGGAAAGGTGATTTAAGCTCTCCAGGTATGTTGCTAGCTGGAAGACGAGGTCAAATAATGTACTGGT CACCTTTTGGCGGAGCTTTATTACCTGCATTAAATAAGAATGCAGCAGCTCCAAATGAGAACTTTAACCTTTGTATAGCT GGAGTTCCAGGCTCTGGAAAATCTGTTTTTATGCAAGAATTAATGCTATCTGTTCTAGGAGTTGGTGGTAAAGTTTTTGT TCTTGATTATGGAAGATCATTTAAGCGTACATGCTTGATTCTAGGCGGCAGCTACATAGAATTTGACATGAAAAATCCTG TATCAATTAATCCATTTTCAGAGGTGCCAGAGGATGATAGTGCAAAGTCTATAGAGGCTAGATCAGACTTTTTATCTAAC TTTCCATCTATTTTAGCTACTATGGCAGCTCCACAGTATGGAACAAGCGATCTACAACAACCAATGCTACAGAGAGCTTT GATATCAGTCTGGCAAAAAAATGGAGCTAAAGCTGAAATCACCGATATTGCAGACTGGTTATCAAATAGAGAAGAATCAT ATGCTAAAGAGCTTGGAAATATGCTCTTTCCTTTTACTAAAGATGGTCAACATGGAAGATTTTTTAGTGGTAAGGCGCAA TTATCCTTGAATTCAGACATAGTAGTGATTGAAACAGATCATCTACGCTCTGTACCAGAGCTGTTAGCTGTGATTGTACA GATTATGATTGTTCATATTAATCAAACAATAGTTAAGGGAGATAGAAGTAGACCTTTTTTAATTATGATCGATGAAGCCT GA
Upstream 100 bases:
>100_bases GATATTGATAATCTTGAGAAAGTTGAAACATCCAAAACTAAATCAAAAAGACGTTGTATTCTATGCTACAGGCAAGCTAA AGCTATTCAAAGCGTAGCTG
Downstream 100 bases:
>100_bases AAGCTATTAGCTGGAAAGCGTTCAGGAGAGTTTATTGAAGAAGCAGGTCGAATAGCTCGAAAATATAATGGATCGATTGC TTTAGCTACTCAGCAACTCA
Product: putative conjugative transfer protein TraC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 693; Mature: 693
Protein sequence:
>693_residues MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIA EFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANI DDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAA DLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQK TSGVGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIA GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSN FPSILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQ LSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTIVKGDRSRPFLIMIDEA
Sequences:
>Translated_693_residues MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIA EFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANI DDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAA DLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQK TSGVGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIA GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSN FPSILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQ LSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTIVKGDRSRPFLIMIDEA >Mature_693_residues MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIA EFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANI DDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAA DLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQK TSGVGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIA GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSN FPSILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQ LSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTIVKGDRSRPFLIMIDEA
Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002789 - InterPro: IPR014117 [H]
Pfam domain/function: PF01935 DUF87 [H]
EC number: NA
Molecular weight: Translated: 77552; Mature: 77552
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIG CCCCCCCCCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH FVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEI HHEECCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE FIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLS EEEEHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC TENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI CCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEE SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREAL EEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCEEEEECHHHCCCHHHHHHHHHHHHHHH ERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCS HHHCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEHHHHHHHHHHHHHHH MLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSV HHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEEE ESKVLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIA CCEEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEE GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFS ECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHH EVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEI CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEH TDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPE HHHHHHHCCHHHHHHHHHCCEECCCCCCCCCCCEECCEEEEEECCCEEEEECHHHHHHHH LLAVIVQIMIVHINQTIVKGDRSRPFLIMIDEA HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC >Mature Secondary Structure MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIG CCCCCCCCCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH FVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEI HHEECCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE FIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLS EEEEHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC TENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI CCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEE SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREAL EEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCEEEEECHHHCCCHHHHHHHHHHHHHHH ERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCS HHHCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEHHHHHHHHHHHHHHH MLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSV HHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEEE ESKVLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKNAAAPNENFNLCIA CCEEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEE GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFS ECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHH EVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEI CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEH TDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPE HHHHHHHCCHHHHHHHHHCCEECCCCCCCCCCCEECCEEEEEECCCEEEEECHHHHHHHH LLAVIVQIMIVHINQTIVKGDRSRPFLIMIDEA HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2265751; 7915817; 1355084 [H]