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The map label for this gene is recD [H]

Identifier: 189182988

GI number: 189182988

Start: 84276

End: 86471

Strand: Direct

Name: recD [H]

Synonym: OTT_0081

Alternate gene names: 189182988

Gene position: 84276-86471 (Clockwise)

Preceding gene: 189182987

Following gene: 189182989

Centisome position: 4.19

GC content: 31.56

Gene sequence:

>2196_bases
ATGAGTGTATTTTCTTACTCTACAAAAGCCTCGTCTATCAATAATCAAAGTTTAGCAGGATTAGTAGAAAGAGTAACTTT
TCATAATACTGACAATGGATTTTGCATCATTAAAGTTAAAGTCAATCATAAGAAAGACTTAATAACAGTAATTGGTAACA
GTGCCACCATTTCAGCTGGACAGCATATTGAAGCTAGCGGCATATGGTTTAATGATAAAGAATATGGACTGCAGTTTAAA
GCTCATACATTAAAAGTTTCAGTACCAACAAGTATAGAGGGTATAGAAAAATATTTAGCATCTGGATTGATTAAAGGCAT
TGGTCCGATATATGCTAAAAAATTAGTCCAAACATTTGGCTTGGATGTTCTTACAGTAATTGAAAATCAGGATCCAGCAT
TAAAAAAGGTGCCAGGAATAGGTCCAATTCGTGCAAAAAAAATTTGGGAAAGTTGGAATAGCCAGAAAATTATAAGTGAT
ATAATGCTGTTTATTCATAACTATAATATTGGCGCTAGTAAAGCTGTTAAAATATATAAGGCTTATGGAGCAGAAGCAAT
AAATATTATTAAATCTAATCCCTATCAATTAGTATCGGATATTAAAGGCATAGGGTTTAAAAGTGCAGATAACATTGCAA
AAGCTATTGGCATTCCAGAAAATTCAATGATAAGAGCACGAGCTGGGCTAAATTATGCTCTAGTTACAGCTATGAGTAAT
GGTAGTTGTGGCATGCCAACTGATAAGCTAATTAATCTATGTCATGAGTTGTTAAATATTGATGTTAGCATTATAATTGA
TGCACTATCCTTTGAAATCAATGAACGAAATGTTGCTGTTGAAAACATAAATGGTGAAGAATGTATATTTCTTAAGGGAT
TAGCTTATGCAGAGCTTAAAATAGCCGAATTATTAGTCCATATTAGTAAAGGTAAACTAGCATGGAATCCAATCAGCAGC
AATAAAATAACAGAATACATAAGTAAGGCAAATATCAAACTATCACCTAGTCAGCAAGATGCTCTTCATCAAGCTTTGAA
GTCTAAAGTAATGATTATTACTGGAGGTCCTGGAGTTGGCAAAACTACTTTAATCAATTCCATAATTAATATTCTAAAAA
GTGAAGGAGTTGTAATATTGCTTGCTGCTCCAACTGGCAGAGCAGCAAAGAGGTTAAGCGAAGCTACTCAACATCCCGCT
CATACTATTCATCGTTTAGTATATAGTCGTCCAGGACAAGATGTACGAACAATCACAAAACTCAAATGTCAGTTATTAAT
ATTAGATGAAATGTCAATGGTTGATGTTACAACAATGTATGCAGCAATAAGCGCACTGCCAAGCACTGCTTCTCTCTTTT
TAGTCGGAGATATTGATCAACTGCCATCAGTAGGACCAGGTCAGGTTTTTAGTGATTTAATTAAGTCTCAAAAATTTCCT
ATAGTAACATTAACAGAAATTTTTAGGCAAAATAATCAAAGTAGCATTATTAGCAATGCCCATAGAATTAATAACGGATT
TTTTCCAATTTTACAATCTAGCCAAAACTCAAATAATGATTTTTATTTTATTAATAGCGATACACCAGAGGATGCGATTG
ATAAAATAACTGAATTAGTTCAGGTACGCTTACCAAAAAAATTTTCTATTTCTCCATTTACAGATATACAAATATTATCT
CCAATAACCAGAGGAATTGTAGGAACAAAGAATCTCAATTCAGTATTACAAAAAGTACTATTACCAAGTACCTCAGCAAA
TGATGAATTACTTATTTGGGGCAATGTGTTTAAAATTGGTGATAAGGTTATGCAAATAGTTAATAATTATGATAAAGATA
TATATAACGGTGACATAGGAATTATTAATACAATTGATCATGAAAACCAAAATATAGTAATAAACTTTGATGGTAATAAA
ATAAGCTATGATTTTGATGAGCTTGATGAAATAGTACTTGCTTATGCTATTACTATTCATAAGTCACAAGGTGGAGAATA
CCACACTGTAATTATTCCATTAATGATGCAACATTATCCTATGCTACAACGAAAGTTAATTTATACTGCTATTACCAGAG
CAAAAAAGTTAGTTATTGTTGTTGGTCAAAAAAAAGCATTAAATATCGCTATTAAAAAAAACATAGCAGAACTAAGGTAT
TCTATGCTCAAGAAAAAATTAATGGATATAACTTAA

Upstream 100 bases:

>100_bases
TATATTATTTAAGAAATCTACAAGGTAGAAAAGCTAAAATTAGAGAAAAAATCTTTTCAAAAGATAACCAATAAAGAATT
ATTAGCCTTATGATGCTAAC

Downstream 100 bases:

>100_bases
AATACAAGTTCAAATGAGCATTCTAAAATGTAAAAAGAGCAAGTATTACAACTTTTGTAATTGAACACTATAAAAAATAA
AAATGAACATAAAAAAACAA

Product: exodeoxyribonuclease V alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 731; Mature: 730

Protein sequence:

>731_residues
MSVFSYSTKASSINNQSLAGLVERVTFHNTDNGFCIIKVKVNHKKDLITVIGNSATISAGQHIEASGIWFNDKEYGLQFK
AHTLKVSVPTSIEGIEKYLASGLIKGIGPIYAKKLVQTFGLDVLTVIENQDPALKKVPGIGPIRAKKIWESWNSQKIISD
IMLFIHNYNIGASKAVKIYKAYGAEAINIIKSNPYQLVSDIKGIGFKSADNIAKAIGIPENSMIRARAGLNYALVTAMSN
GSCGMPTDKLINLCHELLNIDVSIIIDALSFEINERNVAVENINGEECIFLKGLAYAELKIAELLVHISKGKLAWNPISS
NKITEYISKANIKLSPSQQDALHQALKSKVMIITGGPGVGKTTLINSIINILKSEGVVILLAAPTGRAAKRLSEATQHPA
HTIHRLVYSRPGQDVRTITKLKCQLLILDEMSMVDVTTMYAAISALPSTASLFLVGDIDQLPSVGPGQVFSDLIKSQKFP
IVTLTEIFRQNNQSSIISNAHRINNGFFPILQSSQNSNNDFYFINSDTPEDAIDKITELVQVRLPKKFSISPFTDIQILS
PITRGIVGTKNLNSVLQKVLLPSTSANDELLIWGNVFKIGDKVMQIVNNYDKDIYNGDIGIINTIDHENQNIVINFDGNK
ISYDFDELDEIVLAYAITIHKSQGGEYHTVIIPLMMQHYPMLQRKLIYTAITRAKKLVIVVGQKKALNIAIKKNIAELRY
SMLKKKLMDIT

Sequences:

>Translated_731_residues
MSVFSYSTKASSINNQSLAGLVERVTFHNTDNGFCIIKVKVNHKKDLITVIGNSATISAGQHIEASGIWFNDKEYGLQFK
AHTLKVSVPTSIEGIEKYLASGLIKGIGPIYAKKLVQTFGLDVLTVIENQDPALKKVPGIGPIRAKKIWESWNSQKIISD
IMLFIHNYNIGASKAVKIYKAYGAEAINIIKSNPYQLVSDIKGIGFKSADNIAKAIGIPENSMIRARAGLNYALVTAMSN
GSCGMPTDKLINLCHELLNIDVSIIIDALSFEINERNVAVENINGEECIFLKGLAYAELKIAELLVHISKGKLAWNPISS
NKITEYISKANIKLSPSQQDALHQALKSKVMIITGGPGVGKTTLINSIINILKSEGVVILLAAPTGRAAKRLSEATQHPA
HTIHRLVYSRPGQDVRTITKLKCQLLILDEMSMVDVTTMYAAISALPSTASLFLVGDIDQLPSVGPGQVFSDLIKSQKFP
IVTLTEIFRQNNQSSIISNAHRINNGFFPILQSSQNSNNDFYFINSDTPEDAIDKITELVQVRLPKKFSISPFTDIQILS
PITRGIVGTKNLNSVLQKVLLPSTSANDELLIWGNVFKIGDKVMQIVNNYDKDIYNGDIGIINTIDHENQNIVINFDGNK
ISYDFDELDEIVLAYAITIHKSQGGEYHTVIIPLMMQHYPMLQRKLIYTAITRAKKLVIVVGQKKALNIAIKKNIAELRY
SMLKKKLMDIT
>Mature_730_residues
SVFSYSTKASSINNQSLAGLVERVTFHNTDNGFCIIKVKVNHKKDLITVIGNSATISAGQHIEASGIWFNDKEYGLQFKA
HTLKVSVPTSIEGIEKYLASGLIKGIGPIYAKKLVQTFGLDVLTVIENQDPALKKVPGIGPIRAKKIWESWNSQKIISDI
MLFIHNYNIGASKAVKIYKAYGAEAINIIKSNPYQLVSDIKGIGFKSADNIAKAIGIPENSMIRARAGLNYALVTAMSNG
SCGMPTDKLINLCHELLNIDVSIIIDALSFEINERNVAVENINGEECIFLKGLAYAELKIAELLVHISKGKLAWNPISSN
KITEYISKANIKLSPSQQDALHQALKSKVMIITGGPGVGKTTLINSIINILKSEGVVILLAAPTGRAAKRLSEATQHPAH
TIHRLVYSRPGQDVRTITKLKCQLLILDEMSMVDVTTMYAAISALPSTASLFLVGDIDQLPSVGPGQVFSDLIKSQKFPI
VTLTEIFRQNNQSSIISNAHRINNGFFPILQSSQNSNNDFYFINSDTPEDAIDKITELVQVRLPKKFSISPFTDIQILSP
ITRGIVGTKNLNSVLQKVLLPSTSANDELLIWGNVFKIGDKVMQIVNNYDKDIYNGDIGIINTIDHENQNIVINFDGNKI
SYDFDELDEIVLAYAITIHKSQGGEYHTVIIPLMMQHYPMLQRKLIYTAITRAKKLVIVVGQKKALNIAIKKNIAELRYS
MLKKKLMDIT

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=417, Percent_Identity=27.8177458033573, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 80587; Mature: 80456

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVFSYSTKASSINNQSLAGLVERVTFHNTDNGFCIIKVKVNHKKDLITVIGNSATISAG
CCEEECCCCCCCCCCHHHHHHHHHHHEECCCCCEEEEEEEECCCCCEEEEECCCEEECCC
QHIEASGIWFNDKEYGLQFKAHTLKVSVPTSIEGIEKYLASGLIKGIGPIYAKKLVQTFG
CEEEECCEEECCHHHCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDVLTVIENQDPALKKVPGIGPIRAKKIWESWNSQKIISDIMLFIHNYNIGASKAVKIYK
CEEEEEEECCCCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
AYGAEAINIIKSNPYQLVSDIKGIGFKSADNIAKAIGIPENSMIRARAGLNYALVTAMSN
HHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECCCCCEEEEEEECC
GSCGMPTDKLINLCHELLNIDVSIIIDALSFEINERNVAVENINGEECIFLKGLAYAELK
CCCCCCHHHHHHHHHHHHCCCHHHEEEEHHEEECCCEEEEECCCCCCEEEEECCCHHHHH
IAELLVHISKGKLAWNPISSNKITEYISKANIKLSPSQQDALHQALKSKVMIITGGPGVG
HHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCEECCCHHHHHHHHHHCCEEEEECCCCCC
KTTLINSIINILKSEGVVILLAAPTGRAAKRLSEATQHPAHTIHRLVYSRPGQDVRTITK
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHH
LKCQLLILDEMSMVDVTTMYAAISALPSTASLFLVGDIDQLPSVGPGQVFSDLIKSQKFP
HEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHCCCCC
IVTLTEIFRQNNQSSIISNAHRINNGFFPILQSSQNSNNDFYFINSDTPEDAIDKITELV
EEEHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHH
QVRLPKKFSISPFTDIQILSPITRGIVGTKNLNSVLQKVLLPSTSANDELLIWGNVFKIG
HHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHH
DKVMQIVNNYDKDIYNGDIGIINTIDHENQNIVINFDGNKISYDFDELDEIVLAYAITIH
HHHHHHHHHCCCHHCCCCEEEEEEECCCCCEEEEEECCCEEEECHHHHHHHHHHHEEEEE
KSQGGEYHTVIIPLMMQHYPMLQRKLIYTAITRAKKLVIVVGQKKALNIAIKKNIAELRY
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHHHHHHHHHH
SMLKKKLMDIT
HHHHHHHHCCC
>Mature Secondary Structure 
SVFSYSTKASSINNQSLAGLVERVTFHNTDNGFCIIKVKVNHKKDLITVIGNSATISAG
CEEECCCCCCCCCCHHHHHHHHHHHEECCCCCEEEEEEEECCCCCEEEEECCCEEECCC
QHIEASGIWFNDKEYGLQFKAHTLKVSVPTSIEGIEKYLASGLIKGIGPIYAKKLVQTFG
CEEEECCEEECCHHHCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDVLTVIENQDPALKKVPGIGPIRAKKIWESWNSQKIISDIMLFIHNYNIGASKAVKIYK
CEEEEEEECCCCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
AYGAEAINIIKSNPYQLVSDIKGIGFKSADNIAKAIGIPENSMIRARAGLNYALVTAMSN
HHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECCCCCEEEEEEECC
GSCGMPTDKLINLCHELLNIDVSIIIDALSFEINERNVAVENINGEECIFLKGLAYAELK
CCCCCCHHHHHHHHHHHHCCCHHHEEEEHHEEECCCEEEEECCCCCCEEEEECCCHHHHH
IAELLVHISKGKLAWNPISSNKITEYISKANIKLSPSQQDALHQALKSKVMIITGGPGVG
HHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCEECCCHHHHHHHHHHCCEEEEECCCCCC
KTTLINSIINILKSEGVVILLAAPTGRAAKRLSEATQHPAHTIHRLVYSRPGQDVRTITK
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHH
LKCQLLILDEMSMVDVTTMYAAISALPSTASLFLVGDIDQLPSVGPGQVFSDLIKSQKFP
HEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHCCCCC
IVTLTEIFRQNNQSSIISNAHRINNGFFPILQSSQNSNNDFYFINSDTPEDAIDKITELV
EEEHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHH
QVRLPKKFSISPFTDIQILSPITRGIVGTKNLNSVLQKVLLPSTSANDELLIWGNVFKIG
HHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHH
DKVMQIVNNYDKDIYNGDIGIINTIDHENQNIVINFDGNKISYDFDELDEIVLAYAITIH
HHHHHHHHHCCCHHCCCCEEEEEEECCCCCEEEEEECCCEEEECHHHHHHHHHHHEEEEE
KSQGGEYHTVIIPLMMQHYPMLQRKLIYTAITRAKKLVIVVGQKKALNIAIKKNIAELRY
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHHHHHHHHHH
SMLKKKLMDIT
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]