| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189182949
Identifier: 189182949
GI number: 189182949
Start: 49073
End: 50392
Strand: Direct
Name: 189182949
Synonym: OTT_0042
Alternate gene names: NA
Gene position: 49073-50392 (Clockwise)
Preceding gene: 189182943
Following gene: 189182950
Centisome position: 2.44
GC content: 29.24
Gene sequence:
>1320_bases TTGCGTAATGTTCTTTGTGTAAAACTTATAAAAAATTTTCAGTGTTTCACTGAAAAGGAAAAAAAGAAGAAAAAATTGTC CTTCTACAACAAAAAAATTTTCACATCAATTTGCAAGAATTTGCAGGTGAACCTGCAAAAAATTGCAGCTACATATAATA GATATAATAATAATAAAAAAAATAATAATAGATCTAGATCTACTGAAGATAAGTTAATAGAGAATGATCAAAATAAAAAT GAAGATCAACAGCAAAATTTGAAGTTTAAATATACGGAATCTGATGATTTTATAGAAATTGAGTTAGTAGGAAATGAAAA AGAAAATCAACAGCAACAACAGAATTTGAATTCCTATGAGCTTAGTGATTTTAGCAATAAAAAGCTATCAAACAAGTATT ATGAGCAAAATAGTGAGTTAGTAACTCCAGTTATTACTAAGGATTTAGAGATTGAAAAGAATAAATGCTGTCCTAAAAGA AAAAGACTAGCAGATTATTATCCACTAACACCAGAAGATGCAGTTATACTGCAACGTATGTCTAGTAGAAGCTTCAACAT ATACTTCATAAATCAATTACTGTTGAGGTTATCAAGTAAATATCCAAATCGTCATTTTGTAAATAAGATAGCAGTGCTAA ACTATATGGCAAAAGCGTTAGCAAATGAATTACTAACTACTGATCAGGCTAATAGTGGAAATTTTAGATTTAATGATGTA GGAAGATTTAAAGAACAGTATCTAGCAAATATTGAATCTGGTACAGATCGTAGTATGAAAGCTCAGTTGAAGAGTAAAAT AGCTGGAGTCTTTGAAGCAGATACTGCTTATCAAATTTTAACATCTTGTGATTTTGTAGCAGCGGTTCGAACTAGGTTTT TTGTTAAGTTGCTTAAAAATATCACACTAACAGAATGTGATAGATCAAAGATATTACAAGCTGTACAAGATGTATATGGA TACGAAATTCAAGAATTGCAAGTTACACCATTTGAGCAACCTACAACTGTTTCACATAAACAAATCAATGAAGAAGAGTA TCTCTTGAATCTCAGTAAACAACTGGGCTCTAACTCGACTTGGTATAAAGTACGAGAATCTTTAGTTACATGTTATGGTC AAGCTATCGATAAATCATGGTTTAGTCCATTGAAAGTTGTAAATGAAGATAGTGTTAATAAAAAAATATTCATCAAAGCA AAAACAGAATTTGAAGATGATTACATTAGAAACAACTGTATGCAAGGTCTTGAATATGCTTTTAAAGCTCAGGGATTTTC TTTTGAGTTAGTTAAGTTTAGTAATTTTAATAAAATTTAA
Upstream 100 bases:
>100_bases GCAAGTTTGTCAACGCAGGGTTAGGTAATGCTTAGTTGAACTACAAAAAGCCGGTTTCATTGAAGTTGAAAATAGTACAA TAATTAAAAACAATTTTAAG
Downstream 100 bases:
>100_bases AGAGTGATATGGAAAAAGATCTTGCAAAGATTGCTCCAAGTAATATTCAGGCAGAGCAAATGATACTTGGAGCAATTCTG ATTAACAATCGTGCGCTATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 439; Mature: 439
Protein sequence:
>439_residues MRNVLCVKLIKNFQCFTEKEKKKKKLSFYNKKIFTSICKNLQVNLQKIAATYNRYNNNKKNNNRSRSTEDKLIENDQNKN EDQQQNLKFKYTESDDFIEIELVGNEKENQQQQQNLNSYELSDFSNKKLSNKYYEQNSELVTPVITKDLEIEKNKCCPKR KRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLRLSSKYPNRHFVNKIAVLNYMAKALANELLTTDQANSGNFRFNDV GRFKEQYLANIESGTDRSMKAQLKSKIAGVFEADTAYQILTSCDFVAAVRTRFFVKLLKNITLTECDRSKILQAVQDVYG YEIQELQVTPFEQPTTVSHKQINEEEYLLNLSKQLGSNSTWYKVRESLVTCYGQAIDKSWFSPLKVVNEDSVNKKIFIKA KTEFEDDYIRNNCMQGLEYAFKAQGFSFELVKFSNFNKI
Sequences:
>Translated_439_residues MRNVLCVKLIKNFQCFTEKEKKKKKLSFYNKKIFTSICKNLQVNLQKIAATYNRYNNNKKNNNRSRSTEDKLIENDQNKN EDQQQNLKFKYTESDDFIEIELVGNEKENQQQQQNLNSYELSDFSNKKLSNKYYEQNSELVTPVITKDLEIEKNKCCPKR KRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLRLSSKYPNRHFVNKIAVLNYMAKALANELLTTDQANSGNFRFNDV GRFKEQYLANIESGTDRSMKAQLKSKIAGVFEADTAYQILTSCDFVAAVRTRFFVKLLKNITLTECDRSKILQAVQDVYG YEIQELQVTPFEQPTTVSHKQINEEEYLLNLSKQLGSNSTWYKVRESLVTCYGQAIDKSWFSPLKVVNEDSVNKKIFIKA KTEFEDDYIRNNCMQGLEYAFKAQGFSFELVKFSNFNKI >Mature_439_residues MRNVLCVKLIKNFQCFTEKEKKKKKLSFYNKKIFTSICKNLQVNLQKIAATYNRYNNNKKNNNRSRSTEDKLIENDQNKN EDQQQNLKFKYTESDDFIEIELVGNEKENQQQQQNLNSYELSDFSNKKLSNKYYEQNSELVTPVITKDLEIEKNKCCPKR KRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLRLSSKYPNRHFVNKIAVLNYMAKALANELLTTDQANSGNFRFNDV GRFKEQYLANIESGTDRSMKAQLKSKIAGVFEADTAYQILTSCDFVAAVRTRFFVKLLKNITLTECDRSKILQAVQDVYG YEIQELQVTPFEQPTTVSHKQINEEEYLLNLSKQLGSNSTWYKVRESLVTCYGQAIDKSWFSPLKVVNEDSVNKKIFIKA KTEFEDDYIRNNCMQGLEYAFKAQGFSFELVKFSNFNKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51392; Mature: 51392
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNVLCVKLIKNFQCFTEKEKKKKKLSFYNKKIFTSICKNLQVNLQKIAATYNRYNNNKK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NNNRSRSTEDKLIENDQNKNEDQQQNLKFKYTESDDFIEIELVGNEKENQQQQQNLNSYE CCCCCCCHHHHHHCCCCCCCCHHHHCCEEEEECCCCEEEEEEECCCCHHHHHHHCCCCEE LSDFSNKKLSNKYYEQNSELVTPVITKDLEIEKNKCCPKRKRLADYYPLTPEDAVILQRM CCCCCCCHHHHHHHHCCCCEECHHHHCCCCCCHHCCCCHHHHHCCCCCCCCCHHHHHHHH SSRSFNIYFINQLLLRLSSKYPNRHFVNKIAVLNYMAKALANELLTTDQANSGNFRFNDV HCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHH GRFKEQYLANIESGTDRSMKAQLKSKIAGVFEADTAYQILTSCDFVAAVRTRFFVKLLKN HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC ITLTECDRSKILQAVQDVYGYEIQELQVTPFEQPTTVSHKQINEEEYLLNLSKQLGSNST CCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCH WYKVRESLVTCYGQAIDKSWFSPLKVVNEDSVNKKIFIKAKTEFEDDYIRNNCMQGLEYA HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH FKAQGFSFELVKFSNFNKI HHCCCCEEEEEEECCCCCC >Mature Secondary Structure MRNVLCVKLIKNFQCFTEKEKKKKKLSFYNKKIFTSICKNLQVNLQKIAATYNRYNNNKK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NNNRSRSTEDKLIENDQNKNEDQQQNLKFKYTESDDFIEIELVGNEKENQQQQQNLNSYE CCCCCCCHHHHHHCCCCCCCCHHHHCCEEEEECCCCEEEEEEECCCCHHHHHHHCCCCEE LSDFSNKKLSNKYYEQNSELVTPVITKDLEIEKNKCCPKRKRLADYYPLTPEDAVILQRM CCCCCCCHHHHHHHHCCCCEECHHHHCCCCCCHHCCCCHHHHHCCCCCCCCCHHHHHHHH SSRSFNIYFINQLLLRLSSKYPNRHFVNKIAVLNYMAKALANELLTTDQANSGNFRFNDV HCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHH GRFKEQYLANIESGTDRSMKAQLKSKIAGVFEADTAYQILTSCDFVAAVRTRFFVKLLKN HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC ITLTECDRSKILQAVQDVYGYEIQELQVTPFEQPTTVSHKQINEEEYLLNLSKQLGSNST CCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCH WYKVRESLVTCYGQAIDKSWFSPLKVVNEDSVNKKIFIKAKTEFEDDYIRNNCMQGLEYA HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH FKAQGFSFELVKFSNFNKI HHCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA