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The map label for this gene is omp1 [H]

Identifier: 189182937

GI number: 189182937

Start: 36830

End: 39148

Strand: Direct

Name: omp1 [H]

Synonym: OTT_0030

Alternate gene names: 189182937

Gene position: 36830-39148 (Clockwise)

Preceding gene: 189182936

Following gene: 189182938

Centisome position: 1.83

GC content: 30.53

Gene sequence:

>2319_bases
GTGAACAAATTTGTATGGTTTAGTTGGGCCGTAGTATTATTAGCTAATTTATCTTTTGGCAGCATAGCTGTAGCTGATAA
GATTGAGTCTATAGAGGTAATAGGCAATCAAAGAATTGAAAAAGAAGCTATTATTAGTAAATTAGGAGTATCAACCGGTG
ATGAGTTAAATCCTGAAAAAGAAAATGATATTTTACTAACTCTGCATTATACAAAATTTTTTAAAGATATAAGTTTAGAT
TTTATTGATGGTAAGCTTACAGTTAAGGTTCAGGAAGCTCCATTAGTAACAGCAGTGAAGCTAGTAAATGATTCAGGAGC
TATAACTAAAAAAGTCTTGTTAACAATGATTACTATTAAAGCTGGTGACATGCTTATTGATTCAGATTTGCAAGAAAATA
TTACAAGGTTAACTGAAGAGTATAAATCAGCAGGTTTTTTTCTAGTGAAAGTTACATCTGAAATTGATAATGTTAATAAT
GGAGGAGTTGTCTTAACCTTTAAGATAACTGAAGGACCTAGAGTTTTTATAAAGAAAATCTTGTTTGTTGGCAATGATTA
TTATAGTGATAAAAAATTGAGTTCAGTTATTCTTTGTAAAGAAAAGAGCTGGAGTAACTTTGCTTCACCTTTAACATTGT
ATAATGTTATGTATATTGAAAATGATAAAGAATTGCTGCAGCAATTTTACCGAAATAGTGGATTTATGAATTGCAATATT
TCATCTAGTGTTGAGCTTAGTCCTGCTAAAGATTCTGTGGTTATCACTTATATTATTGATGAGGATAAAAGATTTTACTT
AGGAGAGTTAAGTTTAGAAACCAGTATTTCATCTATTAATAGTAAAGAACTTAGTAAATTTTTAAAAGTAGAGCCTAATA
CTTTATTTAACAGTGCAGACCTACATAGTATTAGTCAAAAGATTACAGATGTTTTACAAAAGCAAGGATTATATCAAGTT
CGAGTTTATCCTAAGTTTAGATATCGAGCTGATAGTTCATCTGTTGTAGATGTAGTATTTGTTATTGATTTTGATAAAGG
AATTTATATACGCAATATTAATATTTCAGGCAATACTATTACACAAGATAATGTTATCAGAAGAGAGATAGATGTAATTG
AATGGGATGCATTAAGTGAACGTAAATTAGAAACTACTAAGAAAAATATTAGCAGGTTGAGTTTCATAGATGACGTTAGT
ATAAGCATGGTACCAGTTACTGATAGTGATTATTATGATGTTTTAGTTAAGATTAAAGAAGGCAGAAACCTACGTAATAT
TGGACTTAGCGGTGGATATAATAGTATAACTGGTTTAACTGGAAGCTTTAGCTTTAGCTGGGATAATATCATGGGAACAG
GGCGTTTGATTAACGGAGAACTATCGGTTGCTAAAAAAAGTTCATCTCAATCAATAAGCATAATAGATCCTAATTTTAAT
GGTAGCGGTTTTGTAGGTAAATTACATCTTTTTCACTTTGGAAAGGATCCAATTAATTCTGAAAGTACAACTAGTGCAAG
TATAAAAAAATATAAAGGAGAATATTATTCTCATAATGTTTTTGGAGCAGGCTTTGAACTAGATCGTAAGCTAACTGAGC
ATTTTATTGGTACATTAGGATATACTATTAAGACTGATAAAGGAGAGACTGTATCTGATGAAATTATTCAACAGATATAT
GGTGAGAAGCATGATTTTCTTTATTCAATAATTGATGGAGCTATTACGTATAATAGAACTGATAATTTTCGTAGACCTAA
AAATGGATATCTTATGCGTTATGGAGTATCATTTTCTGGTTTAGGAGGAACAGTAAAATACCTCAAAAATACAGTAATGG
CCAAATTTTTAAAGTCATTTCTTGATAATAAAGTAACTTTTATGTTTGTTACTAGATTTAATAATATTAGAGGAGCTTTA
GGAGAAGAAGTTAAGGTTTATGACTTACTTAAAGTTAGTCAAGATCATCTTAGAGGATTTACTGGTATAGGTCCTAAGAT
ACAAGCCATAGACCTAAGAATAGGTGGTACTAACAGTTACACAGCTAGTGCTGAGTTCTTTGTTCCGATAGGCTTACCAG
ATGAGTTAAATGCCAGAGGGTCAATTTTTATGGATATAGGTAGTGTATGGGGAGGGGATAATGTAGGTATTATTAAAAGT
ATTACTGATAGTGAAAAATTTAATTTAAGGGCTTCTATTGGTATTGGACTAACTTTTGATATAATAGGACAGCCAATAAA
ATTTTTCTATGCTGTGCCTATTAAGCGTGAGAAGTACGATGAAGTTGAAAAATTGGGTTTTACACTAGGATTTATATAG

Upstream 100 bases:

>100_bases
TGCTATGAAAATAGGGGTTGCAATTATTATTTTTTTAATTGTAATTTCTATATCAAATGATATAAAGAATTTATTGTTAA
AGTTTTAAGGTGAAAAAATT

Downstream 100 bases:

>100_bases
CTAATTAATATATGGAGTTATTATGACTAAAAATATTACAGAGATTAATGATGAAGAAAATTTTAAGCAAGAAGTGTTTT
TATCACCTAAGTTGGTGTTA

Product: outer membrane protein Omp1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MNKFVWFSWAVVLLANLSFGSIAVADKIESIEVIGNQRIEKEAIISKLGVSTGDELNPEKENDILLTLHYTKFFKDISLD
FIDGKLTVKVQEAPLVTAVKLVNDSGAITKKVLLTMITIKAGDMLIDSDLQENITRLTEEYKSAGFFLVKVTSEIDNVNN
GGVVLTFKITEGPRVFIKKILFVGNDYYSDKKLSSVILCKEKSWSNFASPLTLYNVMYIENDKELLQQFYRNSGFMNCNI
SSSVELSPAKDSVVITYIIDEDKRFYLGELSLETSISSINSKELSKFLKVEPNTLFNSADLHSISQKITDVLQKQGLYQV
RVYPKFRYRADSSSVVDVVFVIDFDKGIYIRNINISGNTITQDNVIRREIDVIEWDALSERKLETTKKNISRLSFIDDVS
ISMVPVTDSDYYDVLVKIKEGRNLRNIGLSGGYNSITGLTGSFSFSWDNIMGTGRLINGELSVAKKSSSQSISIIDPNFN
GSGFVGKLHLFHFGKDPINSESTTSASIKKYKGEYYSHNVFGAGFELDRKLTEHFIGTLGYTIKTDKGETVSDEIIQQIY
GEKHDFLYSIIDGAITYNRTDNFRRPKNGYLMRYGVSFSGLGGTVKYLKNTVMAKFLKSFLDNKVTFMFVTRFNNIRGAL
GEEVKVYDLLKVSQDHLRGFTGIGPKIQAIDLRIGGTNSYTASAEFFVPIGLPDELNARGSIFMDIGSVWGGDNVGIIKS
ITDSEKFNLRASIGIGLTFDIIGQPIKFFYAVPIKREKYDEVEKLGFTLGFI

Sequences:

>Translated_772_residues
MNKFVWFSWAVVLLANLSFGSIAVADKIESIEVIGNQRIEKEAIISKLGVSTGDELNPEKENDILLTLHYTKFFKDISLD
FIDGKLTVKVQEAPLVTAVKLVNDSGAITKKVLLTMITIKAGDMLIDSDLQENITRLTEEYKSAGFFLVKVTSEIDNVNN
GGVVLTFKITEGPRVFIKKILFVGNDYYSDKKLSSVILCKEKSWSNFASPLTLYNVMYIENDKELLQQFYRNSGFMNCNI
SSSVELSPAKDSVVITYIIDEDKRFYLGELSLETSISSINSKELSKFLKVEPNTLFNSADLHSISQKITDVLQKQGLYQV
RVYPKFRYRADSSSVVDVVFVIDFDKGIYIRNINISGNTITQDNVIRREIDVIEWDALSERKLETTKKNISRLSFIDDVS
ISMVPVTDSDYYDVLVKIKEGRNLRNIGLSGGYNSITGLTGSFSFSWDNIMGTGRLINGELSVAKKSSSQSISIIDPNFN
GSGFVGKLHLFHFGKDPINSESTTSASIKKYKGEYYSHNVFGAGFELDRKLTEHFIGTLGYTIKTDKGETVSDEIIQQIY
GEKHDFLYSIIDGAITYNRTDNFRRPKNGYLMRYGVSFSGLGGTVKYLKNTVMAKFLKSFLDNKVTFMFVTRFNNIRGAL
GEEVKVYDLLKVSQDHLRGFTGIGPKIQAIDLRIGGTNSYTASAEFFVPIGLPDELNARGSIFMDIGSVWGGDNVGIIKS
ITDSEKFNLRASIGIGLTFDIIGQPIKFFYAVPIKREKYDEVEKLGFTLGFI
>Mature_772_residues
MNKFVWFSWAVVLLANLSFGSIAVADKIESIEVIGNQRIEKEAIISKLGVSTGDELNPEKENDILLTLHYTKFFKDISLD
FIDGKLTVKVQEAPLVTAVKLVNDSGAITKKVLLTMITIKAGDMLIDSDLQENITRLTEEYKSAGFFLVKVTSEIDNVNN
GGVVLTFKITEGPRVFIKKILFVGNDYYSDKKLSSVILCKEKSWSNFASPLTLYNVMYIENDKELLQQFYRNSGFMNCNI
SSSVELSPAKDSVVITYIIDEDKRFYLGELSLETSISSINSKELSKFLKVEPNTLFNSADLHSISQKITDVLQKQGLYQV
RVYPKFRYRADSSSVVDVVFVIDFDKGIYIRNINISGNTITQDNVIRREIDVIEWDALSERKLETTKKNISRLSFIDDVS
ISMVPVTDSDYYDVLVKIKEGRNLRNIGLSGGYNSITGLTGSFSFSWDNIMGTGRLINGELSVAKKSSSQSISIIDPNFN
GSGFVGKLHLFHFGKDPINSESTTSASIKKYKGEYYSHNVFGAGFELDRKLTEHFIGTLGYTIKTDKGETVSDEIIQQIY
GEKHDFLYSIIDGAITYNRTDNFRRPKNGYLMRYGVSFSGLGGTVKYLKNTVMAKFLKSFLDNKVTFMFVTRFNNIRGAL
GEEVKVYDLLKVSQDHLRGFTGIGPKIQAIDLRIGGTNSYTASAEFFVPIGLPDELNARGSIFMDIGSVWGGDNVGIIKS
ITDSEKFNLRASIGIGLTFDIIGQPIKFFYAVPIKREKYDEVEKLGFTLGFI

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=825, Percent_Identity=24.1212121212121, Blast_Score=157, Evalue=2e-39,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 86500; Mature: 86500

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFVWFSWAVVLLANLSFGSIAVADKIESIEVIGNQRIEKEAIISKLGVSTGDELNPEK
CCCEEHHHHHHHHHHCCCCCCEEEHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
ENDILLTLHYTKFFKDISLDFIDGKLTVKVQEAPLVTAVKLVNDSGAITKKVLLTMITIK
CCCEEEEEEHHHHHHHCCEEEECCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHEEEE
AGDMLIDSDLQENITRLTEEYKSAGFFLVKVTSEIDNVNNGGVVLTFKITEGPRVFIKKI
CCCEEECCHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCEEEEEEECCCCHHHHHHH
LFVGNDYYSDKKLSSVILCKEKSWSNFASPLTLYNVMYIENDKELLQQFYRNSGFMNCNI
HHHCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCEEEECC
SSSVELSPAKDSVVITYIIDEDKRFYLGELSLETSISSINSKELSKFLKVEPNTLFNSAD
CCCEEECCCCCCEEEEEEEECCCEEEEEEEEEEHHHHHCCHHHHHHHHCCCCCCCCCCCH
LHSISQKITDVLQKQGLYQVRVYPKFRYRADSSSVVDVVFVIDFDKGIYIRNINISGNTI
HHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCEEEEEEECCCCEE
TQDNVIRREIDVIEWDALSERKLETTKKNISRLSFIDDVSISMVPVTDSDYYDVLVKIKE
CCCCHHHHHCCEEEECCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCCCCEEEEEEEEC
GRNLRNIGLSGGYNSITGLTGSFSFSWDNIMGTGRLINGELSVAKKSSSQSISIIDPNFN
CCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCEEEEECCCCCEEEEECCCCC
GSGFVGKLHLFHFGKDPINSESTTSASIKKYKGEYYSHNVFGAGFELDRKLTEHFIGTLG
CCCEEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHCC
YTIKTDKGETVSDEIIQQIYGEKHDFLYSIIDGAITYNRTDNFRRPKNGYLMRYGVSFSG
EEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCEECC
LGGTVKYLKNTVMAKFLKSFLDNKVTFMFVTRFNNIRGALGEEVKVYDLLKVSQDHLRGF
CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHCCCCCEEEEHHHHHCHHHHCCC
TGIGPKIQAIDLRIGGTNSYTASAEFFVPIGLPDELNARGSIFMDIGSVWGGDNVGIIKS
CCCCCEEEEEEEEECCCCCEEECEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEE
ITDSEKFNLRASIGIGLTFDIIGQPIKFFYAVPIKREKYDEVEKLGFTLGFI
CCCCCCEEEEEEECCCEEEHHCCCCEEEEEEECCCCCHHHHHHHCCCEECCC
>Mature Secondary Structure
MNKFVWFSWAVVLLANLSFGSIAVADKIESIEVIGNQRIEKEAIISKLGVSTGDELNPEK
CCCEEHHHHHHHHHHCCCCCCEEEHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
ENDILLTLHYTKFFKDISLDFIDGKLTVKVQEAPLVTAVKLVNDSGAITKKVLLTMITIK
CCCEEEEEEHHHHHHHCCEEEECCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHEEEE
AGDMLIDSDLQENITRLTEEYKSAGFFLVKVTSEIDNVNNGGVVLTFKITEGPRVFIKKI
CCCEEECCHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCEEEEEEECCCCHHHHHHH
LFVGNDYYSDKKLSSVILCKEKSWSNFASPLTLYNVMYIENDKELLQQFYRNSGFMNCNI
HHHCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCEEEECC
SSSVELSPAKDSVVITYIIDEDKRFYLGELSLETSISSINSKELSKFLKVEPNTLFNSAD
CCCEEECCCCCCEEEEEEEECCCEEEEEEEEEEHHHHHCCHHHHHHHHCCCCCCCCCCCH
LHSISQKITDVLQKQGLYQVRVYPKFRYRADSSSVVDVVFVIDFDKGIYIRNINISGNTI
HHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCEEEEEEECCCCEE
TQDNVIRREIDVIEWDALSERKLETTKKNISRLSFIDDVSISMVPVTDSDYYDVLVKIKE
CCCCHHHHHCCEEEECCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCCCCEEEEEEEEC
GRNLRNIGLSGGYNSITGLTGSFSFSWDNIMGTGRLINGELSVAKKSSSQSISIIDPNFN
CCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCEEEEECCCCCEEEEECCCCC
GSGFVGKLHLFHFGKDPINSESTTSASIKKYKGEYYSHNVFGAGFELDRKLTEHFIGTLG
CCCEEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHCC
YTIKTDKGETVSDEIIQQIYGEKHDFLYSIIDGAITYNRTDNFRRPKNGYLMRYGVSFSG
EEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCEECC
LGGTVKYLKNTVMAKFLKSFLDNKVTFMFVTRFNNIRGALGEEVKVYDLLKVSQDHLRGF
CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHCCCCCEEEEHHHHHCHHHHCCC
TGIGPKIQAIDLRIGGTNSYTASAEFFVPIGLPDELNARGSIFMDIGSVWGGDNVGIIKS
CCCCCEEEEEEEEECCCCCEEECEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEE
ITDSEKFNLRASIGIGLTFDIIGQPIKFFYAVPIKREKYDEVEKLGFTLGFI
CCCCCCEEEEEEECCCEEEHHCCCCEEEEEEECCCCCHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]