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The map label for this gene is fliD [H]

Identifier: 189026095

GI number: 189026095

Start: 950887

End: 953055

Strand: Direct

Name: fliD [H]

Synonym: TPASS_0872

Alternate gene names: 189026095

Gene position: 950887-953055 (Clockwise)

Preceding gene: 189026093

Following gene: 189026096

Centisome position: 83.45

GC content: 53.9

Gene sequence:

>2169_bases
GTGTCTGATGTCCGCATCCCCGGAGTAGGGGCCGGTAAGTACGATAACCTCATCCAGTCGCTTATGAAAAAGGAGCGCAT
TCCTCGGGACAACGCTGCGGCAAAGGTGAAGGTTTACGAGGTTCAGAACAACGCGCTCAAGGACGTGGAGCGGTATGCGC
GCGATTTGCGTGACGCCGTCAAAGGACTCTATTCCTTCAACAACCCTTTCGCAGAGAAGGAAGCTCATTCTAGCAACGAG
CGTGCGTTCACCGTCGATGCTACTCGAGACGCTGCCGAGCAGAATCATACACTGCGCGTCAAAGACATCGCACAAGGGGA
TGCGTTTCTCTCAGACCCCCTCCCTGAGGATTTTCGCGTTCCCAGCGGGACGTATACGTTCTGTATTGGAGAAAAAAAAA
TATGCGTGTCGTGGAAAGGCGGGCACTATCGTGATTTTATACGTGCCGTCAACAAGCAGGGCAAAGACTCACTCACCCTC
TCAGAGATAAAAACGAGCGGTGCGAGCCGTGCGCTCCTGTTTCGCTCAGAATTAACGGGAAAGAGCAATCGTCTTTCCTT
TGAAGACGCTGCGCTGGACCTTGCACTGCGCCTGCGCGTCGTGCAGGAAGCACGTTCTGACGTTTTTACACAGGATGTAC
TCAGTGTTGGACCTGGAAAACACGCGCGTTTGGATTTTCCCCACCCTCTGCGCGCGCAGGCAGGGCTTACGCTGGAGTTT
GTCGCGTCTCTGGAAGGGGCATCTATTGCAAACGAAGAGTCGCGTGCGCACACGCCCGCACAGGGAGGCGCTCCCACGTC
TTCCCACGGAAATACGGCGTCCGCTGCACATAATCAGGACGGAGCAGCTGCTGTGCGCCCTACTGAACCGGCAAACGGCG
CTCCTGTACAGGAAGAAACCAGTTCAGTGTTCTTTGAGGGGGTCACAGTAAAGAACGAGGCTTCCCAGGGAGATCTGCCT
ACCACGGACGGCTTGGAAAAATACCCAGCTGTCGACGACAAAGGAGACAATCCGCGCGCACCTGGAGAGTCGCAGGGCAC
GGCCACCCACGAAGGTTCAGGGTCGTCCACAGACAACGCGGATGACACACGCTCAACTGGTGCCTTGGCAGGATCGGGTA
AGCTTGCACTTGAGTCTCTGCAGGGCCACGCGCTTCCTTTACCACCGCTGGTGCTTACACAGAACGCACCGCAGATGGTA
TCCATTCCTTTGCGCGAGTACGGGGATGTTCGCGCGCTCATACTGGATAACGCGCAGGCGCGAGGCGCACTGACACTGCG
CGCTATCCGTGTGCGTGCCGAGGATGCACCAGGTGGTTATGTCCCCGTGAACCCTGCCTCTCAAGCACAGGATGCAGCGT
TTGATTTCGATGGGGTGCACGTTACGCGCGGAACTAATTCTATCACCGACCTTATCCCCGGCGTTACGCTTTCGCTGCAC
GAACGTACAGAAAAAACCGAAACGCTCTCTGTCACCCCCGACGTGAACGCCATGAAGAACGCTATTATAGAATTCGTTGC
TAAGTACAATCGACTCATGGCAGAAATTAACATTGTCACCAGTAACAAGTCAGCCATTATCGACGAGCTTGCGTATCTTA
CCCCCGAGGAGAAAAAGAAAGAGACAGAACAACTCGGCAGCCTCCACGGGGATTCCACGCTTCTTATGCTGAAAGACAGA
CTGAGACGCAATACCAGCAATGCGTACCGCGCCGGCGATGACGGTGCATCGCGGACACTTGCACACATCGGCATTTCCAC
AAAAGCGCACGCTTCGTCTGGCATTAACACGGCACAGCTACGCGGTTATCTTGAAATTGATGAAGAAAAATTACATTCCA
GTTTGAACGCACAAAAGGATCAGGTGCGTGCTCTTTTTGGGCACGATTCAGATGGTGACCTCCTTGTGGACAATGGCGTT
GCATTCACCCTAACAGAACTGCTCAACCCTTATTTGGGACGATCGGGTATTTTTGCCATACGGTCAAACGGCGTTGACGA
GCGTATTAAATCGACAGAAAAACGCGTAGAAACGTACGACAAGCAACTGGAAAAGAAGGAACGGGAGCTGCGACACAAGT
ATCACACCATGGATGGCGCGCTTCGTTCTCTACAAAAGCAGTCTGACGCAATTCAGAACTTCAACCAGTCTGTTCGCAAC
AGGAATTAG

Upstream 100 bases:

>100_bases
AGTTTGCGTATCTGTAAGCCGACAAGCCGCGCGTGGGGTTTTTTTGAAGGGAACTCGGCTGGAGTCTTGATCCACTCTCC
GCAGCTTTCGAGGAGTCATT

Downstream 100 bases:

>100_bases
TGGGAGTCTTAATGGACATTACGATTAACGGACATACACTGCAGTATGTCATTGAACATGAAAAAACTATTGGGGAGGTT
CTAGGCGCGATAGAAGCTGC

Product: flagellar hook-associated protein FliD

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 722; Mature: 721

Protein sequence:

>722_residues
MSDVRIPGVGAGKYDNLIQSLMKKERIPRDNAAAKVKVYEVQNNALKDVERYARDLRDAVKGLYSFNNPFAEKEAHSSNE
RAFTVDATRDAAEQNHTLRVKDIAQGDAFLSDPLPEDFRVPSGTYTFCIGEKKICVSWKGGHYRDFIRAVNKQGKDSLTL
SEIKTSGASRALLFRSELTGKSNRLSFEDAALDLALRLRVVQEARSDVFTQDVLSVGPGKHARLDFPHPLRAQAGLTLEF
VASLEGASIANEESRAHTPAQGGAPTSSHGNTASAAHNQDGAAAVRPTEPANGAPVQEETSSVFFEGVTVKNEASQGDLP
TTDGLEKYPAVDDKGDNPRAPGESQGTATHEGSGSSTDNADDTRSTGALAGSGKLALESLQGHALPLPPLVLTQNAPQMV
SIPLREYGDVRALILDNAQARGALTLRAIRVRAEDAPGGYVPVNPASQAQDAAFDFDGVHVTRGTNSITDLIPGVTLSLH
ERTEKTETLSVTPDVNAMKNAIIEFVAKYNRLMAEINIVTSNKSAIIDELAYLTPEEKKKETEQLGSLHGDSTLLMLKDR
LRRNTSNAYRAGDDGASRTLAHIGISTKAHASSGINTAQLRGYLEIDEEKLHSSLNAQKDQVRALFGHDSDGDLLVDNGV
AFTLTELLNPYLGRSGIFAIRSNGVDERIKSTEKRVETYDKQLEKKERELRHKYHTMDGALRSLQKQSDAIQNFNQSVRN
RN

Sequences:

>Translated_722_residues
MSDVRIPGVGAGKYDNLIQSLMKKERIPRDNAAAKVKVYEVQNNALKDVERYARDLRDAVKGLYSFNNPFAEKEAHSSNE
RAFTVDATRDAAEQNHTLRVKDIAQGDAFLSDPLPEDFRVPSGTYTFCIGEKKICVSWKGGHYRDFIRAVNKQGKDSLTL
SEIKTSGASRALLFRSELTGKSNRLSFEDAALDLALRLRVVQEARSDVFTQDVLSVGPGKHARLDFPHPLRAQAGLTLEF
VASLEGASIANEESRAHTPAQGGAPTSSHGNTASAAHNQDGAAAVRPTEPANGAPVQEETSSVFFEGVTVKNEASQGDLP
TTDGLEKYPAVDDKGDNPRAPGESQGTATHEGSGSSTDNADDTRSTGALAGSGKLALESLQGHALPLPPLVLTQNAPQMV
SIPLREYGDVRALILDNAQARGALTLRAIRVRAEDAPGGYVPVNPASQAQDAAFDFDGVHVTRGTNSITDLIPGVTLSLH
ERTEKTETLSVTPDVNAMKNAIIEFVAKYNRLMAEINIVTSNKSAIIDELAYLTPEEKKKETEQLGSLHGDSTLLMLKDR
LRRNTSNAYRAGDDGASRTLAHIGISTKAHASSGINTAQLRGYLEIDEEKLHSSLNAQKDQVRALFGHDSDGDLLVDNGV
AFTLTELLNPYLGRSGIFAIRSNGVDERIKSTEKRVETYDKQLEKKERELRHKYHTMDGALRSLQKQSDAIQNFNQSVRN
RN
>Mature_721_residues
SDVRIPGVGAGKYDNLIQSLMKKERIPRDNAAAKVKVYEVQNNALKDVERYARDLRDAVKGLYSFNNPFAEKEAHSSNER
AFTVDATRDAAEQNHTLRVKDIAQGDAFLSDPLPEDFRVPSGTYTFCIGEKKICVSWKGGHYRDFIRAVNKQGKDSLTLS
EIKTSGASRALLFRSELTGKSNRLSFEDAALDLALRLRVVQEARSDVFTQDVLSVGPGKHARLDFPHPLRAQAGLTLEFV
ASLEGASIANEESRAHTPAQGGAPTSSHGNTASAAHNQDGAAAVRPTEPANGAPVQEETSSVFFEGVTVKNEASQGDLPT
TDGLEKYPAVDDKGDNPRAPGESQGTATHEGSGSSTDNADDTRSTGALAGSGKLALESLQGHALPLPPLVLTQNAPQMVS
IPLREYGDVRALILDNAQARGALTLRAIRVRAEDAPGGYVPVNPASQAQDAAFDFDGVHVTRGTNSITDLIPGVTLSLHE
RTEKTETLSVTPDVNAMKNAIIEFVAKYNRLMAEINIVTSNKSAIIDELAYLTPEEKKKETEQLGSLHGDSTLLMLKDRL
RRNTSNAYRAGDDGASRTLAHIGISTKAHASSGINTAQLRGYLEIDEEKLHSSLNAQKDQVRALFGHDSDGDLLVDNGVA
FTLTELLNPYLGRSGIFAIRSNGVDERIKSTEKRVETYDKQLEKKERELRHKYHTMDGALRSLQKQSDAIQNFNQSVRNR
N

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Periplasmic flagellum. Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=260, Percent_Identity=25.3846153846154, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 78428; Mature: 78297

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVRIPGVGAGKYDNLIQSLMKKERIPRDNAAAKVKVYEVQNNALKDVERYARDLRDAV
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
KGLYSFNNPFAEKEAHSSNERAFTVDATRDAAEQNHTLRVKDIAQGDAFLSDPLPEDFRV
HHHHHCCCCCHHHHCCCCCCEEEEEECCHHHHHCCCEEEEEECCCCCCHHCCCCCCCCCC
PSGTYTFCIGEKKICVSWKGGHYRDFIRAVNKQGKDSLTLSEIKTSGASRALLFRSELTG
CCCCEEEEECCCEEEEEECCCCHHHHHHHHCCCCCCCEEHHHHHCCCCCEEEEEHHHCCC
KSNRLSFEDAALDLALRLRVVQEARSDVFTQDVLSVGPGKHARLDFPHPLRAQAGLTLEF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCEEEE
VASLEGASIANEESRAHTPAQGGAPTSSHGNTASAAHNQDGAAAVRPTEPANGAPVQEET
HHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHC
SSVFFEGVTVKNEASQGDLPTTDGLEKYPAVDDKGDNPRAPGESQGTATHEGSGSSTDNA
CCEEEECEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DDTRSTGALAGSGKLALESLQGHALPLPPLVLTQNAPQMVSIPLREYGDVRALILDNAQA
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCEEEECHHHCCCEEEEEECCCCC
RGALTLRAIRVRAEDAPGGYVPVNPASQAQDAAFDFDGVHVTRGTNSITDLIPGVTLSLH
CCCEEEEEEEEEECCCCCCEEECCCCCCHHHCCCCCCCEEEECCCCHHHHHHCCCEEEEH
ERTEKTETLSVTPDVNAMKNAIIEFVAKYNRLMAEINIVTSNKSAIIDELAYLTPEEKKK
HHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCCCHHHHH
ETEQLGSLHGDSTLLMLKDRLRRNTSNAYRAGDDGASRTLAHIGISTKAHASSGINTAQL
HHHHHHCCCCCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHH
RGYLEIDEEKLHSSLNAQKDQVRALFGHDSDGDLLVDNGVAFTLTELLNPYLGRSGIFAI
EEEEEECHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEE
RSNGVDERIKSTEKRVETYDKQLEKKERELRHKYHTMDGALRSLQKQSDAIQNFNQSVRN
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RN
CC
>Mature Secondary Structure 
SDVRIPGVGAGKYDNLIQSLMKKERIPRDNAAAKVKVYEVQNNALKDVERYARDLRDAV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
KGLYSFNNPFAEKEAHSSNERAFTVDATRDAAEQNHTLRVKDIAQGDAFLSDPLPEDFRV
HHHHHCCCCCHHHHCCCCCCEEEEEECCHHHHHCCCEEEEEECCCCCCHHCCCCCCCCCC
PSGTYTFCIGEKKICVSWKGGHYRDFIRAVNKQGKDSLTLSEIKTSGASRALLFRSELTG
CCCCEEEEECCCEEEEEECCCCHHHHHHHHCCCCCCCEEHHHHHCCCCCEEEEEHHHCCC
KSNRLSFEDAALDLALRLRVVQEARSDVFTQDVLSVGPGKHARLDFPHPLRAQAGLTLEF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCEEEE
VASLEGASIANEESRAHTPAQGGAPTSSHGNTASAAHNQDGAAAVRPTEPANGAPVQEET
HHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHC
SSVFFEGVTVKNEASQGDLPTTDGLEKYPAVDDKGDNPRAPGESQGTATHEGSGSSTDNA
CCEEEECEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DDTRSTGALAGSGKLALESLQGHALPLPPLVLTQNAPQMVSIPLREYGDVRALILDNAQA
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCEEEECHHHCCCEEEEEECCCCC
RGALTLRAIRVRAEDAPGGYVPVNPASQAQDAAFDFDGVHVTRGTNSITDLIPGVTLSLH
CCCEEEEEEEEEECCCCCCEEECCCCCCHHHCCCCCCCEEEECCCCHHHHHHCCCEEEEH
ERTEKTETLSVTPDVNAMKNAIIEFVAKYNRLMAEINIVTSNKSAIIDELAYLTPEEKKK
HHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCCCHHHHH
ETEQLGSLHGDSTLLMLKDRLRRNTSNAYRAGDDGASRTLAHIGISTKAHASSGINTAQL
HHHHHHCCCCCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHH
RGYLEIDEEKLHSSLNAQKDQVRALFGHDSDGDLLVDNGVAFTLTELLNPYLGRSGIFAI
EEEEEECHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEE
RSNGVDERIKSTEKRVETYDKQLEKKERELRHKYHTMDGALRSLQKQSDAIQNFNQSVRN
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]