| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189026010
Identifier: 189026010
GI number: 189026010
Start: 852723
End: 853409
Strand: Direct
Name: 189026010
Synonym: TPASS_0785
Alternate gene names: NA
Gene position: 852723-853409 (Clockwise)
Preceding gene: 189026009
Following gene: 189026011
Centisome position: 74.84
GC content: 49.78
Gene sequence:
>687_bases ATGACTCGCGCGTCCTCATACCCTGCTTTTTCACCCGTACCCTTCTTGCGCACTGTACTCCTTGCACTTTTTCTCATGTC CCTGTGCGTGTGGCAACGCGCACACGCGCGAGGTAAGGTGCGCTTTTTTGCAGACAGTCTAGAAGGCTCTGCCGACCCCC ACGCCCCACGCACTGTACTCCGCGGAAACGCGCGCATGTACTTTGCCGATTTAGAAATCCACGCAGATAAGATTGAAATT TCCGGCGACGACTATCATCTTGTTACCGCCACCGGCAACGTGCGCGGAGAAAAAAAAACACAGCACCTTACGTTCTCTGC ACAATCTCTGCATTTTAGCAGAAATGCGCATACTACCGAACTACTCGGTGCTGCGCAGATTTCTGACAAAAGAGAAAACG TAATGGCACGTGCAGAGCGCATAGTCTACCACGAAAAAAACGAAACATTGCTCTTACAAATGAACGTGTCCCTTACCTAC CAAGACCTGCAATGTCAGGCCATGTTCGGTATGTATTACCGCAAAAGTATATTCCTTGAATTAAGCGGTGCGCCACGGGT TAGCGACCGCGGTAATCTTTTTCAGGCAGAACGTATCACGTTGAATATGGCCCGTAGAGAAATTCAGCTACACGGAAAAG TGCAAGGCTCAATTCTCAAACCCTACGAATGGGAACAACACCGGTGA
Upstream 100 bases:
>100_bases CCAAACGCTTTGTGTTTCAAAATGGCGTTCACATAGACGTCGATCTTGACTCTTTCGCCAAAACCCGCGCGTCACGGTAC GCCGCACCGAATCTCAGTCC
Downstream 100 bases:
>100_bases CATTTCAACGCTTCCTGTCTGCCGCGCGCAGACTCCGTGCAAAGCACGATGTCACATATACTTTAAAGGCAGAGACAGAG AAAGAAAAAAATATTTCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MTRASSYPAFSPVPFLRTVLLALFLMSLCVWQRAHARGKVRFFADSLEGSADPHAPRTVLRGNARMYFADLEIHADKIEI SGDDYHLVTATGNVRGEKKTQHLTFSAQSLHFSRNAHTTELLGAAQISDKRENVMARAERIVYHEKNETLLLQMNVSLTY QDLQCQAMFGMYYRKSIFLELSGAPRVSDRGNLFQAERITLNMARREIQLHGKVQGSILKPYEWEQHR
Sequences:
>Translated_228_residues MTRASSYPAFSPVPFLRTVLLALFLMSLCVWQRAHARGKVRFFADSLEGSADPHAPRTVLRGNARMYFADLEIHADKIEI SGDDYHLVTATGNVRGEKKTQHLTFSAQSLHFSRNAHTTELLGAAQISDKRENVMARAERIVYHEKNETLLLQMNVSLTY QDLQCQAMFGMYYRKSIFLELSGAPRVSDRGNLFQAERITLNMARREIQLHGKVQGSILKPYEWEQHR >Mature_227_residues TRASSYPAFSPVPFLRTVLLALFLMSLCVWQRAHARGKVRFFADSLEGSADPHAPRTVLRGNARMYFADLEIHADKIEIS GDDYHLVTATGNVRGEKKTQHLTFSAQSLHFSRNAHTTELLGAAQISDKRENVMARAERIVYHEKNETLLLQMNVSLTYQ DLQCQAMFGMYYRKSIFLELSGAPRVSDRGNLFQAERITLNMARREIQLHGKVQGSILKPYEWEQHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26085; Mature: 25954
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRASSYPAFSPVPFLRTVLLALFLMSLCVWQRAHARGKVRFFADSLEGSADPHAPRTVL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHEE RGNARMYFADLEIHADKIEISGDDYHLVTATGNVRGEKKTQHLTFSAQSLHFSRNAHTTE ECCCEEEEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEHHHEEECCCCCHHH LLGAAQISDKRENVMARAERIVYHEKNETLLLQMNVSLTYQDLQCQAMFGMYYRKSIFLE HHHHHHHCCHHHHHHHHHHHHEEECCCCEEEEEEECEEEEECCCHHHHHHHHEEEEEEEE LSGAPRVSDRGNLFQAERITLNMARREIQLHGKVQGSILKPYEWEQHR ECCCCCCCCCCCEEEHHHEEEEEHHEEEEEECEECCCEECCCCCCCCC >Mature Secondary Structure TRASSYPAFSPVPFLRTVLLALFLMSLCVWQRAHARGKVRFFADSLEGSADPHAPRTVL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHEE RGNARMYFADLEIHADKIEISGDDYHLVTATGNVRGEKKTQHLTFSAQSLHFSRNAHTTE ECCCEEEEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEHHHEEECCCCCHHH LLGAAQISDKRENVMARAERIVYHEKNETLLLQMNVSLTYQDLQCQAMFGMYYRKSIFLE HHHHHHHCCHHHHHHHHHHHHEEECCCCEEEEEEECEEEEECCCHHHHHHHHEEEEEEEE LSGAPRVSDRGNLFQAERITLNMARREIQLHGKVQGSILKPYEWEQHR ECCCCCCCCCCCEEEHHHEEEEEHHEEEEEECEECCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA