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The map label for this gene is tmpB

Identifier: 189025994

GI number: 189025994

Start: 836404

End: 837381

Strand: Direct

Name: tmpB

Synonym: TPASS_0769

Alternate gene names: 189025994

Gene position: 836404-837381 (Clockwise)

Preceding gene: 189025993

Following gene: 189025995

Centisome position: 73.4

GC content: 55.83

Gene sequence:

>978_bases
ATGAAGACACGTAATTTCTCGCTCGTATCCGCGTTGTACGTACTGCTGGGTGTTCCTCTGTTTGTGTCTGCCGCTTCCTA
CGACGACAATGAATTTTCTCGCAAGAGTCGTGCGTACTCGGAGCTTGCAGAGAAGACATACGATGCGGGAGAGTATGACG
TCTCTGCAGAGTACGCCCGGCTCGCTGAGGATTTTGCGCAAAAATCCTCGGTCTACATCAAGGAAACTATGGCGCGCACC
ACTGCCGAGGACGCTATGAACGCTGCGCGCACCCGCCACGCGTGGGCGAAAAATGAGCGCATCGATCGCGCCTATCCGAC
CGAGTATTTGCTCGCTAGCGAGGCTATCAAGACCGGAGGGCTCGCTTTTGACAGCAAGCAGTACGACGTAGCGCTCACGT
GGGCGCGTAAGGCGTTGGACGCACTCAAAAACGTAAAGCCTGAAAGTCAGTTGCTTGCAAAGGCCGCGAAGGAGGAGGCT
GCGCGCAAGGCCGCCGAGGCACGAAAACTCGAAGAACAAAGAATTGCAGCCCAGAAAGCGCAGGAAGAACGTAAGCGTGC
GGAGGAGGAAGCTGCGCGCAAGGCCGCCGAGGCACGAAAACTCGAAGAACAAAGAATTGCAGCCCAGAAAGCGCAGGAAG
AACGTAAGCGTGCGGAGGAGGAAGCTGCGCGCAAGGCCGCCGAGGAAGCAGCGCGAAAGGCGGAGGAACTCGAGAAGGGT
CGTGTGCTACCTGCGCAATACAAGGTGACTACGTGGTCCATTGACCGGGAATGTTTCTGGAATATTGCCAAAAACCCCGC
CGTTTATGGCAACCCCTTCCTCTGGAAGAAGTTGTATGAGGCGAACAAGGACAAAATTCCTCAGTCCAAAAACCCCAATT
GGGTAGAGCCTGAGACAGTCCTGGTCATCCCCAGTCTCAAGGGAGAGGAGCGCGAGGGTCTGTATGAGCCCAACGTGAAA
TACCGTCCTCTGCCGTAA

Upstream 100 bases:

>100_bases
CCATATCTGACACCTCTTCACCTTCTCGCGTGCAGTCTCGGGGTGTTGAAGACGGAGGACGTTCTCCAAAATCCTCTATG
AACGAAGAAGGAGCCTCTCG

Downstream 100 bases:

>100_bases
CGGATAGACAAGAGCGTATACGCTTTTTCCCCTTTTCCACAAGGGTGCAAGGGGCGTGGTTGGGAGCCCATAGAGAAAGA
GCTCCCAGAGCGCTGGAACG

Product: outer membrane protein

Products: NA

Alternate protein names: Antigen tmpB

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKTRNFSLVSALYVLLGVPLFVSAASYDDNEFSRKSRAYSELAEKTYDAGEYDVSAEYARLAEDFAQKSSVYIKETMART
TAEDAMNAARTRHAWAKNERIDRAYPTEYLLASEAIKTGGLAFDSKQYDVALTWARKALDALKNVKPESQLLAKAAKEEA
ARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEEAARKAEELEKG
RVLPAQYKVTTWSIDRECFWNIAKNPAVYGNPFLWKKLYEANKDKIPQSKNPNWVEPETVLVIPSLKGEEREGLYEPNVK
YRPLP

Sequences:

>Translated_325_residues
MKTRNFSLVSALYVLLGVPLFVSAASYDDNEFSRKSRAYSELAEKTYDAGEYDVSAEYARLAEDFAQKSSVYIKETMART
TAEDAMNAARTRHAWAKNERIDRAYPTEYLLASEAIKTGGLAFDSKQYDVALTWARKALDALKNVKPESQLLAKAAKEEA
ARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEEAARKAEELEKG
RVLPAQYKVTTWSIDRECFWNIAKNPAVYGNPFLWKKLYEANKDKIPQSKNPNWVEPETVLVIPSLKGEEREGLYEPNVK
YRPLP
>Mature_325_residues
MKTRNFSLVSALYVLLGVPLFVSAASYDDNEFSRKSRAYSELAEKTYDAGEYDVSAEYARLAEDFAQKSSVYIKETMART
TAEDAMNAARTRHAWAKNERIDRAYPTEYLLASEAIKTGGLAFDSKQYDVALTWARKALDALKNVKPESQLLAKAAKEEA
ARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEEAARKAEELEKG
RVLPAQYKVTTWSIDRECFWNIAKNPAVYGNPFLWKKLYEANKDKIPQSKNPNWVEPETVLVIPSLKGEEREGLYEPNVK
YRPLP

Specific function: Tmp may serve as a porin or transport protein for large molecules

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To T.phagedenis tmpB

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TMPB_TREPA (P19649)

Other databases:

- EMBL:   M58562
- EMBL:   AE000520
- EMBL:   M10931
- PIR:   F71283
- RefSeq:   NP_219206.1
- ProteinModelPortal:   P19649
- GeneID:   2611387
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0769
- NMPDR:   fig|243276.1.peg.765
- TIGR:   TP_0769
- HOGENOM:   HBG251062
- OMA:   YMELATK
- ProtClustDB:   CLSK491137
- BioCyc:   TPAL243276:TP_0769-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36961; Mature: 36961

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRNFSLVSALYVLLGVPLFVSAASYDDNEFSRKSRAYSELAEKTYDAGEYDVSAEYAR
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LAEDFAQKSSVYIKETMARTTAEDAMNAARTRHAWAKNERIDRAYPTEYLLASEAIKTGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
LAFDSKQYDVALTWARKALDALKNVKPESQLLAKAAKEEAARKAAEARKLEEQRIAAQKA
CEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEERKRAEEEAARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEEAARKAEELEKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RVLPAQYKVTTWSIDRECFWNIAKNPAVYGNPFLWKKLYEANKDKIPQSKNPNWVEPETV
CCCCCEEEEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCCCEE
LVIPSLKGEEREGLYEPNVKYRPLP
EEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTRNFSLVSALYVLLGVPLFVSAASYDDNEFSRKSRAYSELAEKTYDAGEYDVSAEYAR
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LAEDFAQKSSVYIKETMARTTAEDAMNAARTRHAWAKNERIDRAYPTEYLLASEAIKTGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
LAFDSKQYDVALTWARKALDALKNVKPESQLLAKAAKEEAARKAAEARKLEEQRIAAQKA
CEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEERKRAEEEAARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEEAARKAEELEKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RVLPAQYKVTTWSIDRECFWNIAKNPAVYGNPFLWKKLYEANKDKIPQSKNPNWVEPETV
CCCCCEEEEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCCCEE
LVIPSLKGEEREGLYEPNVKYRPLP
EEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1894368; 9665876; 3922944