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The map label for this gene is msmE

Identifier: 189025962

GI number: 189025962

Start: 803950

End: 805260

Strand: Direct

Name: msmE

Synonym: TPASS_0737

Alternate gene names: NA

Gene position: 803950-805260 (Clockwise)

Preceding gene: 189025958

Following gene: 189025975

Centisome position: 70.56

GC content: 52.1

Gene sequence:

>1311_bases
ATGCGTAATACCGGATCCGCCACCTACGCCCGCATCGGCGGTGTGTTCCTCTCTTTCTTTGTGCTGTTACCCGTCTTCTG
CCATGGCAGCAAAGAGAAGGGAAAGGAAGAAGAACCGGTTCGCCTCTCAGTCCTCATACGAGAGAAGCATTACTCTTCGG
GCCTGCAGAATGTGTTTACGAAGTTGGAATTGGAAGAAGGAATCGCCGTCACCGTCGAAACCATCCAGGACGATCAGTAT
CCTACGGTGCTTCACGCGCGCCTTGCAGACGGGACCGCTCCGGATGTTGTAGAGGTGTCTCTTCCCTCGCTCCATGCCCT
TGACCCATACCTTTACTTTGTAGATCTGAGCAAAGAAGCCTGGATACCGGATCTACTGATTCCTCCCACAGATCCGTACG
GCAAGACATTTGCGCTTCCCTTAAACTGCGCCGTGTCTATCAATGCACTTTTCTACAACAAGGACCTTTTTGATCGCTAC
GGGATATCCGAGCCCAAAAGCTGGAATGAACTCCTAGAAAGCTGCGCTCTCATTGTAAAAAGTGGCATTTCTATCGTACC
CCTCGCGCTCAGCACAACGGAAAGCTTTCCACATACGTTGCTTGCTGACGCGATTACGAAAGTACTCGGTGAGCAGGGCG
CTCGAGATTTAGTCAAACGTGCCACAGACGACTCCATCGATTGGACGCACGAGCGTGCGCTCTATCCTGTACTCGGAGCC
TATCTGGAACTGTTCAAGCGGGGATACGTAAACAAACACCACCGGACTGCGCGCGTGCGCGAAATCATTCATGATTTTAC
ACGCGATCGCATCGCTATGTACTTTGGCAGTCACCTGGTTGCAGATGCAATCATAAAAGAACGTCCTGGAATCAACTTGG
GCGCGTGCGTCCTCCCTATAACCGAAAATGCACAAGACGTACTGACTGGAAGTTTGGAAGTGCAAGGACTCGCAGTGCAC
AAAAAAAGCGCGCGTGTGGCAACCGCGTGTCGTGCACTCTCTGTGCTTGCGTCTGCCGCGTACCAAAACAGTTTCTTTGA
AGAACACAAAGGGCTTCCTGCGTTTCGAAACACCACCAGCGCAGTTATTCCTGCGTGCCTCAGTGCCCTGTTTAAAAGCC
ATATAGAGAAAGGAAAAGTAATACAGGCAATCGACGCGTACGCGCAGGCGCAAAACACACCCCACAGAGCCTCTGTTTTT
CCAGATTTCGCCGCGTATGTAACCGACCCGGCACCAACTGCGCACACCATGCTGCACCGCGCCCAAACTGAAGCGCGGAG
GAGAAGAGAGCCGGTACAAAAAAAAGAATGA

Upstream 100 bases:

>100_bases
TTGTTTCCTGGCAGGTTTTGCGTGCAGTCCTCATTCAAGCAAAACGCCATCGGCGCCGAGAAGGGTCCGATGAACAGATA
TACGTGTCGGGGAGGTTTAC

Downstream 100 bases:

>100_bases
GAGCTCCTGCGCGGGCAATACGTGCCACGAGCCCGGCAGCTTAACCTACCGCGCGACAAGACAATCTTGCCACAGCCGGT
CGAGGTCATAAAAGGCGCGC

Product: sugar ABC transporter, periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MRNTGSATYARIGGVFLSFFVLLPVFCHGSKEKGKEEEPVRLSVLIREKHYSSGLQNVFTKLELEEGIAVTVETIQDDQY
PTVLHARLADGTAPDVVEVSLPSLHALDPYLYFVDLSKEAWIPDLLIPPTDPYGKTFALPLNCAVSINALFYNKDLFDRY
GISEPKSWNELLESCALIVKSGISIVPLALSTTESFPHTLLADAITKVLGEQGARDLVKRATDDSIDWTHERALYPVLGA
YLELFKRGYVNKHHRTARVREIIHDFTRDRIAMYFGSHLVADAIIKERPGINLGACVLPITENAQDVLTGSLEVQGLAVH
KKSARVATACRALSVLASAAYQNSFFEEHKGLPAFRNTTSAVIPACLSALFKSHIEKGKVIQAIDAYAQAQNTPHRASVF
PDFAAYVTDPAPTAHTMLHRAQTEARRRREPVQKKE

Sequences:

>Translated_436_residues
MRNTGSATYARIGGVFLSFFVLLPVFCHGSKEKGKEEEPVRLSVLIREKHYSSGLQNVFTKLELEEGIAVTVETIQDDQY
PTVLHARLADGTAPDVVEVSLPSLHALDPYLYFVDLSKEAWIPDLLIPPTDPYGKTFALPLNCAVSINALFYNKDLFDRY
GISEPKSWNELLESCALIVKSGISIVPLALSTTESFPHTLLADAITKVLGEQGARDLVKRATDDSIDWTHERALYPVLGA
YLELFKRGYVNKHHRTARVREIIHDFTRDRIAMYFGSHLVADAIIKERPGINLGACVLPITENAQDVLTGSLEVQGLAVH
KKSARVATACRALSVLASAAYQNSFFEEHKGLPAFRNTTSAVIPACLSALFKSHIEKGKVIQAIDAYAQAQNTPHRASVF
PDFAAYVTDPAPTAHTMLHRAQTEARRRREPVQKKE
>Mature_436_residues
MRNTGSATYARIGGVFLSFFVLLPVFCHGSKEKGKEEEPVRLSVLIREKHYSSGLQNVFTKLELEEGIAVTVETIQDDQY
PTVLHARLADGTAPDVVEVSLPSLHALDPYLYFVDLSKEAWIPDLLIPPTDPYGKTFALPLNCAVSINALFYNKDLFDRY
GISEPKSWNELLESCALIVKSGISIVPLALSTTESFPHTLLADAITKVLGEQGARDLVKRATDDSIDWTHERALYPVLGA
YLELFKRGYVNKHHRTARVREIIHDFTRDRIAMYFGSHLVADAIIKERPGINLGACVLPITENAQDVLTGSLEVQGLAVH
KKSARVATACRALSVLASAAYQNSFFEEHKGLPAFRNTTSAVIPACLSALFKSHIEKGKVIQAIDAYAQAQNTPHRASVF
PDFAAYVTDPAPTAHTMLHRAQTEARRRREPVQKKE

Specific function: Unknown

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48293; Mature: 48293

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNTGSATYARIGGVFLSFFVLLPVFCHGSKEKGKEEEPVRLSVLIREKHYSSGLQNVFT
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
KLELEEGIAVTVETIQDDQYPTVLHARLADGTAPDVVEVSLPSLHALDPYLYFVDLSKEA
HHHHCCCCEEEEEECCCCCCCHHHEEHHCCCCCCCEEEECCCCCHHCCCEEEEEECCCCC
WIPDLLIPPTDPYGKTFALPLNCAVSINALFYNKDLFDRYGISEPKSWNELLESCALIVK
CCCCCCCCCCCCCCCEEEEEEECEEEEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHH
SGISIVPLALSTTESFPHTLLADAITKVLGEQGARDLVKRATDDSIDWTHERALYPVLGA
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
YLELFKRGYVNKHHRTARVREIIHDFTRDRIAMYFGSHLVADAIIKERPGINLGACVLPI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
TENAQDVLTGSLEVQGLAVHKKSARVATACRALSVLASAAYQNSFFEEHKGLPAFRNTTS
CCCHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHH
AVIPACLSALFKSHIEKGKVIQAIDAYAQAQNTPHRASVFPDFAAYVTDPAPTAHTMLHR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHH
AQTEARRRREPVQKKE
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRNTGSATYARIGGVFLSFFVLLPVFCHGSKEKGKEEEPVRLSVLIREKHYSSGLQNVFT
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
KLELEEGIAVTVETIQDDQYPTVLHARLADGTAPDVVEVSLPSLHALDPYLYFVDLSKEA
HHHHCCCCEEEEEECCCCCCCHHHEEHHCCCCCCCEEEECCCCCHHCCCEEEEEECCCCC
WIPDLLIPPTDPYGKTFALPLNCAVSINALFYNKDLFDRYGISEPKSWNELLESCALIVK
CCCCCCCCCCCCCCCEEEEEEECEEEEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHH
SGISIVPLALSTTESFPHTLLADAITKVLGEQGARDLVKRATDDSIDWTHERALYPVLGA
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
YLELFKRGYVNKHHRTARVREIIHDFTRDRIAMYFGSHLVADAIIKERPGINLGACVLPI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
TENAQDVLTGSLEVQGLAVHKKSARVATACRALSVLASAAYQNSFFEEHKGLPAFRNTTS
CCCHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHH
AVIPACLSALFKSHIEKGKVIQAIDAYAQAQNTPHRASVFPDFAAYVTDPAPTAHTMLHR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHH
AQTEARRRREPVQKKE
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA