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The map label for this gene is csrA

Identifier: 189025882

GI number: 189025882

Start: 721149

End: 721370

Strand: Reverse

Name: csrA

Synonym: TPASS_0657

Alternate gene names: 189025882

Gene position: 721370-721149 (Counterclockwise)

Preceding gene: 189025883

Following gene: 189025876

Centisome position: 63.31

GC content: 49.1

Gene sequence:

>222_bases
ATGTTGATCCTTTCGCGCAAGACAAATCAGAAAATCTTTATTGGGGACTCGATTGAACTGACTATTATTGAGATTCGCGG
CGATCAGGTAAAAGTCGGTGTGGAAGCGCCGCGTTCGGTGAAAATATTCCGACAAGAGGTATACGAAGAGATCCAGAGAG
AGAACCGCGCTGCGTCCGACTCCCCCTGGTCTCCTAACTCATTGCCTCAGTTGCCTGTGTAG

Upstream 100 bases:

>100_bases
AGAAAAACCGCAAGGCGATGCAAGTGGCGATGGGTGGCGATCGGTGGAGAACGAAGCACGATATCGTCGCCGAAATGGCA
GAAAGAAGGGCGCAGGAACA

Downstream 100 bases:

>100_bases
TTGCAGAGGATACCCATCCCTCGGGGTGGGAGTGTTTTGCGCGGATGACTGAGTTCACCTAAATCGCACCGCGTTCCAGT
GCGCATTGTAGTGTTCGATT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MLILSRKTNQKIFIGDSIELTIIEIRGDQVKVGVEAPRSVKIFRQEVYEEIQRENRAASDSPWSPNSLPQLPV

Sequences:

>Translated_73_residues
MLILSRKTNQKIFIGDSIELTIIEIRGDQVKVGVEAPRSVKIFRQEVYEEIQRENRAASDSPWSPNSLPQLPV
>Mature_73_residues
MLILSRKTNQKIFIGDSIELTIIEIRGDQVKVGVEAPRSVKIFRQEVYEEIQRENRAASDSPWSPNSLPQLPV

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=60, Percent_Identity=40, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_TREPA (O83663)

Other databases:

- EMBL:   AE000520
- PIR:   B71297
- RefSeq:   NP_219094.1
- ProteinModelPortal:   O83663
- SMR:   O83663
- IntAct:   O83663
- GeneID:   2611156
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0657
- NMPDR:   fig|243276.1.peg.653
- TIGR:   TP_0657
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   CLSK2300266
- BioCyc:   TPAL243276:TP_0657-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8336; Mature: 8336

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILSRKTNQKIFIGDSIELTIIEIRGDQVKVGVEAPRSVKIFRQEVYEEIQRENRAASD
CEEECCCCCCEEEECCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
SPWSPNSLPQLPV
CCCCCCCCCCCCC
>Mature Secondary Structure
MLILSRKTNQKIFIGDSIELTIIEIRGDQVKVGVEAPRSVKIFRQEVYEEIQRENRAASD
CEEECCCCCCEEEECCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
SPWSPNSLPQLPV
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876