| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025745
Identifier: 189025745
GI number: 189025745
Start: 554770
End: 557745
Strand: Direct
Name: 189025745
Synonym: TPASS_0515
Alternate gene names: NA
Gene position: 554770-557745 (Clockwise)
Preceding gene: 189025744
Following gene: 189025754
Centisome position: 48.69
GC content: 42.2
Gene sequence:
>2976_bases ATGAGAGCATGGTATCCAATTTGGGGCATATTCTTTCTTTTTTGTCCCCTCTTTGGTGAAAGTGGTCTACGCAAATTAAG AATTATTATTAATTCGGCACAGGAAACTACGCGCCTTTCTGAAACTGGACAACCTATATTGGAAAGTACCGGCCGCGTGC CGCTGTCCCCCTTTGATTTGCAAGATCAGTTGGTAGTCTTTACCGGGAATGTTTCCATTTCCATTGATGATGGGAGCGTT ACCGCAACGATTCTTTCAGATCAAACTGTCTACAACACCTCTGCCCAAATTCTGTATTCCACAGGAAACGTTCGCTATTC TAGAACTGAAGGAGAAACGAAAACTATTGAAATAAGTGGAACGCGTTTTATTTTTGAACTAAAAACTTTAAAAGGATTAT TTCTTGACGGTTCTCTTACCTTACCAATCAAAGGGCAACAGGTTTTGTTCGTCCAGTCTCCAATCATACACAGCGATGCG TATACATCAGTAATTTTGAAGCAAGCGACGCTTTCCACTGAGGAAGATCCTGAACAAGCACTATGGAGTGTTCATACAAA GAACATATGGTTGCTGCCCAATAATCAGTTAGCATTTTCACACGGGGTATTGTCATTTGGGGTTGTTCCTCTTTTATACA TTCCCTTTTTCTATTACCCAAAAGACGAGTTTATTGGTAATCCGGTGTTTGGTCTGCGCAGTAGAGCAGGAGCGTTCATT CAGACGACCACATATCTGTTAGGAAAACGGCCAAAGAGTGCGTACCCACCCTCCTTTGGAACACAGTCTCCTGCGCAGGA GGAGGCACCAAACTATTTAAAAATAAGTGCGGACTATTACTCTGCATTGGGAGGTATGGCAGGTATCAGTACTTTCTTTC AAGCAAAAGACTATCTCCCATTTGTGCGGTTTTCAGCATACATTGGCGCTTCGAGAACTGTGCACCAAAGAGGTAACGGC GCCTACTCTATCTATGATACCACCGGCCAAGTGATGTGGGATAAAAGCTATCTATTTGGGATGCAGGTGCCATTTCGTTA TTATGCAGAATGTGCACTTCGTTTTCATAAGACACCTTTGTATGTAGATGTGCATGTGCCAATCATTTCTGATCCCTTTT TTTCTACTGATTTTTTACAACGGAGTGAAGATCTCAACTGGTTTCATCTTGCTTTAAGTCCTCGATCGCTCAGAGAGCTT ACGCAAAGCACCATAAGCAGCTATGACTGGAAAATCTCTGCTTCGCTGCGCCCTGTCTGGCTTGTACTTCATCCTTGGTT GCGCGATTTTTCGCTCGATCCGATTTCGTTCACCGTACATTTTAATTCGAAGTCTGATAGTAAAAAAAACAGCTCTTCTC CAGAGCGTAACTTCTTCTACCCTCATTCGATGGAATCTCGAGCAGGATTGTCGTTCTCTGGTACGCTGTTCTCTCATGTG TGGGAAAGACAAAAATCTCAACAAAAAGAATCGTACGCGCCAAAAGAAATACGTAATCCACTTGCATACACTCCTGCAGA CGGGTTATCTAGGGAGGGTTCTCCTCCTGAACAGTCCCCTGCAGTATCAAAGGAGAACAGCGAGACTGATTCTACCTTCG ATTTTTTTATGCCAGAATTTCGTGAAGAAAATGAACGTCGTACTGGTACTGATCATGCGTATGTTTTTACGCGATACGCT TTAGATTACAAAGGTAAAGGTGACATCGTGTACGATGCACAGTTCAATCACGGTTCGTGGGATGACGCGTCGAAAATAAA GTGGAATGATCTGCAATCACAGCATGTGACAATACGAGGAGATTTTTCCATTCGCTCTCAGTTTCAGTGTGTAAATGATA TAATTCGCATGTCAAACGGGATACAGTGCACTCTGCAGCACCGATATCCGATTCATGGTCAACCACCTGCAAAACAAAAT GGATTTCAGAACTCCGCTTTAGTGCAGAGTTCGAATAATCTTGCAGTGTATCCTTTTTCTGCAGATTCCTTTTTTCGAGA AAGTTTTCTCGGTTGGTCAATTACCCCCGTGCTATACGACTCGTCTCGACCTACTGGGAAAAGTTCATTACATGTACGTG ATCATAGCATCACCGCAAATGCTGCTTTTTCACTGTATGGATATACACAGCAGATACGTGTCAGTGTGCATTTTGCGCCC GGACCATATGCGTATAGCATTGCGACGTTTCTTTCTTTTCCGTATATCTCTGCGACGCTCTCTGCACGCTTTCTCGATAA ACCGCAGGTACGCGCTGAATTAGATTTTCGAATGCCTTACGAAATAACCTGTAAACAAACCTACGTATACGATATTGGAA AAAGTATGAGCGATTCTTATGAAGTGTCGCTCGGCTGGAAGTATTTTTCTCTTTCTTATCTTCTAAAGGGGGAATCTGGC AAGGCTGCACCTTCTGGAAATAATGGTCTTTCTATAAGTAAATTAAAGCTCACGTTGTCTCATGATGATTTTCCGTTGAC AGTACGTTTTTGGAAGCGGCGTATAAAAATACAGGGGACATTGTCTTCCTCGTTAGAGATTAATTTTAAAGATCTGGATA AAAGTCATATCAGTTTTTCTCCGCTAATAACTTTTTCCATCTATAAATTTCTCGATCTTTCTATAAACACTGTGATTAAA AATGAGAAACTAACGCCTTACTTTCCCACCCAGTTATCGAAATCTCCAAAAACTAGGCTGTGGGATGCATTTGTCTCATC GTTATACTTTTGGGATGAAATGAAACGGAGTTCTGCGCTGTTCCCAATACGTACCTTGAATATTGAACTTGCACATTACT TAAAAGATTGGACGCTTCGTTTTGGGTATCGCTTACACTCGGAACCCCCTTCTTCAGGGTCTCGGCAAATATCTCCTCTT GTTTCCTCAATTAGTCTTTCAATAAATTGGAATCCATTACCGATGGTGAGAACGCGTGCGAGAAAAACACCAGGTATGTT TGAAGTTGGTATCTAG
Upstream 100 bases:
>100_bases ACGGTGGAACTATCGTTGCACAGGGAAGCCCTGAAGCAGTATCCCAGATAACTGAGTCTCGCACCGGTTGGTACATCAAA GAGGTGCTGTGTAAAAAGAC
Downstream 100 bases:
>100_bases AGTGTAAGTGATCTTACCGGCAAAAACGTATGGAGCGTAATGCTTTGTAAGCAAATTCGTCCCGTGAAAGTAAAAGGAGT ATGCAGCCAGTACACGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 991; Mature: 991
Protein sequence:
>991_residues MRAWYPIWGIFFLFCPLFGESGLRKLRIIINSAQETTRLSETGQPILESTGRVPLSPFDLQDQLVVFTGNVSISIDDGSV TATILSDQTVYNTSAQILYSTGNVRYSRTEGETKTIEISGTRFIFELKTLKGLFLDGSLTLPIKGQQVLFVQSPIIHSDA YTSVILKQATLSTEEDPEQALWSVHTKNIWLLPNNQLAFSHGVLSFGVVPLLYIPFFYYPKDEFIGNPVFGLRSRAGAFI QTTTYLLGKRPKSAYPPSFGTQSPAQEEAPNYLKISADYYSALGGMAGISTFFQAKDYLPFVRFSAYIGASRTVHQRGNG AYSIYDTTGQVMWDKSYLFGMQVPFRYYAECALRFHKTPLYVDVHVPIISDPFFSTDFLQRSEDLNWFHLALSPRSLREL TQSTISSYDWKISASLRPVWLVLHPWLRDFSLDPISFTVHFNSKSDSKKNSSSPERNFFYPHSMESRAGLSFSGTLFSHV WERQKSQQKESYAPKEIRNPLAYTPADGLSREGSPPEQSPAVSKENSETDSTFDFFMPEFREENERRTGTDHAYVFTRYA LDYKGKGDIVYDAQFNHGSWDDASKIKWNDLQSQHVTIRGDFSIRSQFQCVNDIIRMSNGIQCTLQHRYPIHGQPPAKQN GFQNSALVQSSNNLAVYPFSADSFFRESFLGWSITPVLYDSSRPTGKSSLHVRDHSITANAAFSLYGYTQQIRVSVHFAP GPYAYSIATFLSFPYISATLSARFLDKPQVRAELDFRMPYEITCKQTYVYDIGKSMSDSYEVSLGWKYFSLSYLLKGESG KAAPSGNNGLSISKLKLTLSHDDFPLTVRFWKRRIKIQGTLSSSLEINFKDLDKSHISFSPLITFSIYKFLDLSINTVIK NEKLTPYFPTQLSKSPKTRLWDAFVSSLYFWDEMKRSSALFPIRTLNIELAHYLKDWTLRFGYRLHSEPPSSGSRQISPL VSSISLSINWNPLPMVRTRARKTPGMFEVGI
Sequences:
>Translated_991_residues MRAWYPIWGIFFLFCPLFGESGLRKLRIIINSAQETTRLSETGQPILESTGRVPLSPFDLQDQLVVFTGNVSISIDDGSV TATILSDQTVYNTSAQILYSTGNVRYSRTEGETKTIEISGTRFIFELKTLKGLFLDGSLTLPIKGQQVLFVQSPIIHSDA YTSVILKQATLSTEEDPEQALWSVHTKNIWLLPNNQLAFSHGVLSFGVVPLLYIPFFYYPKDEFIGNPVFGLRSRAGAFI QTTTYLLGKRPKSAYPPSFGTQSPAQEEAPNYLKISADYYSALGGMAGISTFFQAKDYLPFVRFSAYIGASRTVHQRGNG AYSIYDTTGQVMWDKSYLFGMQVPFRYYAECALRFHKTPLYVDVHVPIISDPFFSTDFLQRSEDLNWFHLALSPRSLREL TQSTISSYDWKISASLRPVWLVLHPWLRDFSLDPISFTVHFNSKSDSKKNSSSPERNFFYPHSMESRAGLSFSGTLFSHV WERQKSQQKESYAPKEIRNPLAYTPADGLSREGSPPEQSPAVSKENSETDSTFDFFMPEFREENERRTGTDHAYVFTRYA LDYKGKGDIVYDAQFNHGSWDDASKIKWNDLQSQHVTIRGDFSIRSQFQCVNDIIRMSNGIQCTLQHRYPIHGQPPAKQN GFQNSALVQSSNNLAVYPFSADSFFRESFLGWSITPVLYDSSRPTGKSSLHVRDHSITANAAFSLYGYTQQIRVSVHFAP GPYAYSIATFLSFPYISATLSARFLDKPQVRAELDFRMPYEITCKQTYVYDIGKSMSDSYEVSLGWKYFSLSYLLKGESG KAAPSGNNGLSISKLKLTLSHDDFPLTVRFWKRRIKIQGTLSSSLEINFKDLDKSHISFSPLITFSIYKFLDLSINTVIK NEKLTPYFPTQLSKSPKTRLWDAFVSSLYFWDEMKRSSALFPIRTLNIELAHYLKDWTLRFGYRLHSEPPSSGSRQISPL VSSISLSINWNPLPMVRTRARKTPGMFEVGI >Mature_991_residues MRAWYPIWGIFFLFCPLFGESGLRKLRIIINSAQETTRLSETGQPILESTGRVPLSPFDLQDQLVVFTGNVSISIDDGSV TATILSDQTVYNTSAQILYSTGNVRYSRTEGETKTIEISGTRFIFELKTLKGLFLDGSLTLPIKGQQVLFVQSPIIHSDA YTSVILKQATLSTEEDPEQALWSVHTKNIWLLPNNQLAFSHGVLSFGVVPLLYIPFFYYPKDEFIGNPVFGLRSRAGAFI QTTTYLLGKRPKSAYPPSFGTQSPAQEEAPNYLKISADYYSALGGMAGISTFFQAKDYLPFVRFSAYIGASRTVHQRGNG AYSIYDTTGQVMWDKSYLFGMQVPFRYYAECALRFHKTPLYVDVHVPIISDPFFSTDFLQRSEDLNWFHLALSPRSLREL TQSTISSYDWKISASLRPVWLVLHPWLRDFSLDPISFTVHFNSKSDSKKNSSSPERNFFYPHSMESRAGLSFSGTLFSHV WERQKSQQKESYAPKEIRNPLAYTPADGLSREGSPPEQSPAVSKENSETDSTFDFFMPEFREENERRTGTDHAYVFTRYA LDYKGKGDIVYDAQFNHGSWDDASKIKWNDLQSQHVTIRGDFSIRSQFQCVNDIIRMSNGIQCTLQHRYPIHGQPPAKQN GFQNSALVQSSNNLAVYPFSADSFFRESFLGWSITPVLYDSSRPTGKSSLHVRDHSITANAAFSLYGYTQQIRVSVHFAP GPYAYSIATFLSFPYISATLSARFLDKPQVRAELDFRMPYEITCKQTYVYDIGKSMSDSYEVSLGWKYFSLSYLLKGESG KAAPSGNNGLSISKLKLTLSHDDFPLTVRFWKRRIKIQGTLSSSLEINFKDLDKSHISFSPLITFSIYKFLDLSINTVIK NEKLTPYFPTQLSKSPKTRLWDAFVSSLYFWDEMKRSSALFPIRTLNIELAHYLKDWTLRFGYRLHSEPPSSGSRQISPL VSSISLSINWNPLPMVRTRARKTPGMFEVGI
Specific function: Unknown
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 112618; Mature: 112618
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAWYPIWGIFFLFCPLFGESGLRKLRIIINSAQETTRLSETGQPILESTGRVPLSPFDL CCCEEHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCHHHHCCCCCCCCCCCC QDQLVVFTGNVSISIDDGSVTATILSDQTVYNTSAQILYSTGNVRYSRTEGETKTIEISG CCCEEEEECCEEEEEECCCEEEEEECCCEEECCCEEEEEECCCEEEEECCCCEEEEEEEC TRFIFELKTLKGLFLDGSLTLPIKGQQVLFVQSPIIHSDAYTSVILKQATLSTEEDPEQA CEEEEEEECCCEEEECCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH LWSVHTKNIWLLPNNQLAFSHGVLSFGVVPLLYIPFFYYPKDEFIGNPVFGLRSRAGAFI HHEEECCEEEEEECCCEEEECCHHHHHHHHHHHHCCEECCCHHHCCCCCHHHHHCCCCEE QTTTYLLGKRPKSAYPPSFGTQSPAQEEAPNYLKISADYYSALGGMAGISTFFQAKDYLP EEEEHHHCCCCCCCCCCCCCCCCCCHHCCCCEEEEECHHHHHHCHHHHHHHHHHHHCCCC FVRFSAYIGASRTVHQRGNGAYSIYDTTGQVMWDKSYLFGMQVPFRYYAECALRFHKTPL HHHHHHHHCCCCEEEECCCCEEEEEECCCCEEEECCEEEEECCCHHHHHHHHHHCCCCCE YVDVHVPIISDPFFSTDFLQRSEDLNWFHLALSPRSLRELTQSTISSYDWKISASLRPVW EEEEEEEEECCCCCCHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEECCCCEEE LVLHPWLRDFSLDPISFTVHFNSKSDSKKNSSSPERNFFYPHSMESRAGLSFSGTLFSHV EEEEHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHH WERQKSQQKESYAPKEIRNPLAYTPADGLSREGSPPEQSPAVSKENSETDSTFDFFMPEF HHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHH REENERRTGTDHAYVFTRYALDYKGKGDIVYDAQFNHGSWDDASKIKWNDLQSQHVTIRG HHCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCEEEEEE DFSIRSQFQCVNDIIRMSNGIQCTLQHRYPIHGQPPAKQNGFQNSALVQSSNNLAVYPFS CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEC ADSFFRESFLGWSITPVLYDSSRPTGKSSLHVRDHSITANAAFSLYGYTQQIRVSVHFAP CHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEECEEEECEEEEEECEEEEEEEEEEECC GPYAYSIATFLSFPYISATLSARFLDKPQVRAELDFRMPYEITCKQTYVYDIGKSMSDSY CCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEEEEECCCCCCCCE EVSLGWKYFSLSYLLKGESGKAAPSGNNGLSISKLKLTLSHDDFPLTVRFWKRRIKIQGT EEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEEE LSSSLEINFKDLDKSHISFSPLITFSIYKFLDLSINTVIKNEKLTPYFPTQLSKSPKTRL ECCCEEEEEECCCCCCCEECHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHCCCCCCHHH WDAFVSSLYFWDEMKRSSALFPIRTLNIELAHYLKDWTLRFGYRLHSEPPSSGSRQISPL HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHEEECEEECCCCCCCCCCHHHHE VSSISLSINWNPLPMVRTRARKTPGMFEVGI EEEEEEEEECCCCCHHHHHHCCCCCEEEECC >Mature Secondary Structure MRAWYPIWGIFFLFCPLFGESGLRKLRIIINSAQETTRLSETGQPILESTGRVPLSPFDL CCCEEHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCHHHHCCCCCCCCCCCC QDQLVVFTGNVSISIDDGSVTATILSDQTVYNTSAQILYSTGNVRYSRTEGETKTIEISG CCCEEEEECCEEEEEECCCEEEEEECCCEEECCCEEEEEECCCEEEEECCCCEEEEEEEC TRFIFELKTLKGLFLDGSLTLPIKGQQVLFVQSPIIHSDAYTSVILKQATLSTEEDPEQA CEEEEEEECCCEEEECCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH LWSVHTKNIWLLPNNQLAFSHGVLSFGVVPLLYIPFFYYPKDEFIGNPVFGLRSRAGAFI HHEEECCEEEEEECCCEEEECCHHHHHHHHHHHHCCEECCCHHHCCCCCHHHHHCCCCEE QTTTYLLGKRPKSAYPPSFGTQSPAQEEAPNYLKISADYYSALGGMAGISTFFQAKDYLP EEEEHHHCCCCCCCCCCCCCCCCCCHHCCCCEEEEECHHHHHHCHHHHHHHHHHHHCCCC FVRFSAYIGASRTVHQRGNGAYSIYDTTGQVMWDKSYLFGMQVPFRYYAECALRFHKTPL HHHHHHHHCCCCEEEECCCCEEEEEECCCCEEEECCEEEEECCCHHHHHHHHHHCCCCCE YVDVHVPIISDPFFSTDFLQRSEDLNWFHLALSPRSLRELTQSTISSYDWKISASLRPVW EEEEEEEEECCCCCCHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEECCCCEEE LVLHPWLRDFSLDPISFTVHFNSKSDSKKNSSSPERNFFYPHSMESRAGLSFSGTLFSHV EEEEHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHH WERQKSQQKESYAPKEIRNPLAYTPADGLSREGSPPEQSPAVSKENSETDSTFDFFMPEF HHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHH REENERRTGTDHAYVFTRYALDYKGKGDIVYDAQFNHGSWDDASKIKWNDLQSQHVTIRG HHCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCEEEEEE DFSIRSQFQCVNDIIRMSNGIQCTLQHRYPIHGQPPAKQNGFQNSALVQSSNNLAVYPFS CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEC ADSFFRESFLGWSITPVLYDSSRPTGKSSLHVRDHSITANAAFSLYGYTQQIRVSVHFAP CHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEECEEEECEEEEEECEEEEEEEEEEECC GPYAYSIATFLSFPYISATLSARFLDKPQVRAELDFRMPYEITCKQTYVYDIGKSMSDSY CCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEEEEECCCCCCCCE EVSLGWKYFSLSYLLKGESGKAAPSGNNGLSISKLKLTLSHDDFPLTVRFWKRRIKIQGT EEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEEE LSSSLEINFKDLDKSHISFSPLITFSIYKFLDLSINTVIKNEKLTPYFPTQLSKSPKTRL ECCCEEEEEECCCCCCCEECHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHCCCCCCHHH WDAFVSSLYFWDEMKRSSALFPIRTLNIELAHYLKDWTLRFGYRLHSEPPSSGSRQISPL HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHEEECEEECCCCCCCCCCHHHHE VSSISLSINWNPLPMVRTRARKTPGMFEVGI EEEEEEEEECCCCCHHHHHHCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA