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The map label for this gene is rpmB

Identifier: 189025595

GI number: 189025595

Start: 385030

End: 385266

Strand: Direct

Name: rpmB

Synonym: TPASS_0362

Alternate gene names: 189025595

Gene position: 385030-385266 (Clockwise)

Preceding gene: 189025593

Following gene: 189025596

Centisome position: 33.79

GC content: 59.92

Gene sequence:

>237_bases
ATGGCAAGAAGATGTGGACTGTGTGGAAAGGGGACGATCAGCGGGTGCGCCGTGAGTAAATCGATGCACCACTGCAAGCG
GGTGTGGAAACCGAACCTGCTCGCAGTGAGAGTAGTTGTAGATGGCTCTGCGCTGAACATGCGGATTTGCGCGCGCTGCC
TACGCAGCAACCCTCTTATGAAAAAGGCTCAGCCGCGGGCGAACGCGCCGCTAAGGGCGGCGGCGCCCAAGCTCTGA

Upstream 100 bases:

>100_bases
GGTTGACCACCGCACAGGGGAGCATTATGCCATAAAGCGCGCGTGCGCGCCTTTACTCTGGCGGACCTTTTCTTTATCAT
CGGCGGCGGAGACATGAACG

Downstream 100 bases:

>100_bases
CGCGAGCGACCAAACGGCGAAGAGAAGCACGCCGCATGCGCCGCTGGCTACGGCCCTGAGAGAGAAGCCGCAGGCTCCCA
TGCTGGAGTAGGTCGCCGCG

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MARRCGLCGKGTISGCAVSKSMHHCKRVWKPNLLAVRVVVDGSALNMRICARCLRSNPLMKKAQPRANAPLRAAAPKL

Sequences:

>Translated_78_residues
MARRCGLCGKGTISGCAVSKSMHHCKRVWKPNLLAVRVVVDGSALNMRICARCLRSNPLMKKAQPRANAPLRAAAPKL
>Mature_77_residues
ARRCGLCGKGTISGCAVSKSMHHCKRVWKPNLLAVRVVVDGSALNMRICARCLRSNPLMKKAQPRANAPLRAAAPKL

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_TREPA (P96131)

Other databases:

- EMBL:   U70868
- EMBL:   AE000520
- PIR:   H71334
- RefSeq:   NP_218802.1
- ProteinModelPortal:   P96131
- SMR:   P96131
- IntAct:   P96131
- GeneID:   2611789
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0362
- NMPDR:   fig|243276.1.peg.361
- TIGR:   TP_0362
- HOGENOM:   HBG597003
- OMA:   TRCLRSN
- ProtClustDB:   PRK00359
- BioCyc:   TPAL243276:TP_0362-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 8440; Mature: 8309

Theoretical pI: Translated: 11.83; Mature: 11.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
12.8 %Cys+Met (Translated Protein)
7.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
11.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRCGLCGKGTISGCAVSKSMHHCKRVWKPNLLAVRVVVDGSALNMRICARCLRSNPLM
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCC
KKAQPRANAPLRAAAPKL
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARRCGLCGKGTISGCAVSKSMHHCKRVWKPNLLAVRVVVDGSALNMRICARCLRSNPLM
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCC
KKAQPRANAPLRAAAPKL
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876