| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025581
Identifier: 189025581
GI number: 189025581
Start: 373696
End: 375105
Strand: Reverse
Name: 189025581
Synonym: TPASS_0348
Alternate gene names: NA
Gene position: 375105-373696 (Counterclockwise)
Preceding gene: 189025582
Following gene: 189025577
Centisome position: 32.92
GC content: 59.86
Gene sequence:
>1410_bases GTGCGGCTCGTGCGGAGCAGGCTGCCACTAGACGTACGCGATGAGTTAGTGTCGCTTTTAGGCGGCATGTGTTTCTTTCT CTCTACGGTTGAACACGTCATTCCAAAGCCGCTGCCTTTCTTTCGCGTGGGGCTTGCGAATTTGCCGCTGTTGATCTCGC CGGATCTGCTCCCTTTCTGTGCGTACGCGCGTTTAGTATTCCTGAAGGTAATAGGGCAGGCTCTGGTGAGTGGGACGCTC TTTTCTTATGTATTTGTCCTCTCGCTTGCAGGGAGCACCGCTTCGGGTGCGCTCATGTATGCGCTGCGGTTCGTCCCGTG CCGGTACCTTTCGTGCGTGGGGATAAGCGTGATGGGTGCGTTCTGTTCAAACGTGATACAGCTTACGCTTGCTCGGGTGC TCGTTTTTGGCGCGGGGGTGTGGTACGTACTCCCGCTATTTTGCGCGCTGGGGGCAGTGAGCAGTACCTTACTCGGAGCG CTAACCGGCCATTTTCTCTCCCACTCCCAGTGGTACGCGCACCTGCAGAACGCGGCATGCGGACAACAAGACACCGCACC GCCTGCGTCTCTTTTTTTTCCGGTACAGGCGGGGTGTGAATGCACGGCGCCGTGTTCGGAACACGGGCTTAGGCCGCGTG TGCTGCGTTATGTACGGATGGGGACAGGACTCCTGCTCCTGTTGATACTGCTGTGTGTGCCGCGGCTGAGCGTGCAGGCG TCCGTGTGCGGGATCGCACTGCTGCTCTATGCGGCAACGGGGGGACGCATCCGCTGGATGACCTTGGCAGGGCTGTGGGT GGGAACGCTCGCCTGCTACCTTAGACCGCCGGTTGGACGCGTGTGGGCAACGGTGCTTGGGGTCCCCCTGACGAGCGGTG CGCTTTCGGCAGGAGCGCGCCAGGCCTGCATGGCCTCGGGGATGGTATACCTTTCAAAGTGGATACTGCGCGTGCCGCCG CACCTGCCGGGAAAGTTCGGGCAGACAGTCGTCCACGCGCTTTCGCTCATGCACCGGCTGAGCTCGTTCAAGTGCGCGGC GCACGACGGAACGCTACACAAGAAATCGACCGCATTCTTCTCGCGCTCTGGGCAACTCGACAGCGGACGCCAACGCGCCG CTAAATCCGCCCCCCCCCGCACGCTATATTCGAAAGGTAGGACCGGCCCGCAGCGTGACCGGGAGAATGAGACAACGCGT GGTGTCGCTCAAAAAGTAATTCACCGCCTTCTGCGCAATCCAAGCGCTCTGCGACACAATCCAACTGAATCCCTCGGCAA CAACGGTCAGAGCGAAGGTAATAAACCAGCCCAAATCCAATGCCTTGATAATCCCTTCGCTAATAAGCTTTTGCCGCAGC GCAACGAGCGCCACGCGCTGCACCGTTTCTGCAGGCAGCTTACCTGCTAA
Upstream 100 bases:
>100_bases TGGCTGTGCGCTCTGTGCGAGAGGCGACGGACGATGACTTAGCTGCACTTCTGTTTCGGGAAAGCACCAGCGGCGGTGGC TGTGGGAGCGGCGCGGGAGG
Downstream 100 bases:
>100_bases AAAGCGGGTGTTAGGGTTGAGCGGAAAGTCCACCCCGCCGCTCACACTCAAGGCAAAGCCCCACCACTCAGAAATCAAAT GCTGGAACGACACTTGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MRLVRSRLPLDVRDELVSLLGGMCFFLSTVEHVIPKPLPFFRVGLANLPLLISPDLLPFCAYARLVFLKVIGQALVSGTL FSYVFVLSLAGSTASGALMYALRFVPCRYLSCVGISVMGAFCSNVIQLTLARVLVFGAGVWYVLPLFCALGAVSSTLLGA LTGHFLSHSQWYAHLQNAACGQQDTAPPASLFFPVQAGCECTAPCSEHGLRPRVLRYVRMGTGLLLLLILLCVPRLSVQA SVCGIALLLYAATGGRIRWMTLAGLWVGTLACYLRPPVGRVWATVLGVPLTSGALSAGARQACMASGMVYLSKWILRVPP HLPGKFGQTVVHALSLMHRLSSFKCAAHDGTLHKKSTAFFSRSGQLDSGRQRAAKSAPPRTLYSKGRTGPQRDRENETTR GVAQKVIHRLLRNPSALRHNPTESLGNNGQSEGNKPAQIQCLDNPFANKLLPQRNERHALHRFCRQLTC
Sequences:
>Translated_469_residues MRLVRSRLPLDVRDELVSLLGGMCFFLSTVEHVIPKPLPFFRVGLANLPLLISPDLLPFCAYARLVFLKVIGQALVSGTL FSYVFVLSLAGSTASGALMYALRFVPCRYLSCVGISVMGAFCSNVIQLTLARVLVFGAGVWYVLPLFCALGAVSSTLLGA LTGHFLSHSQWYAHLQNAACGQQDTAPPASLFFPVQAGCECTAPCSEHGLRPRVLRYVRMGTGLLLLLILLCVPRLSVQA SVCGIALLLYAATGGRIRWMTLAGLWVGTLACYLRPPVGRVWATVLGVPLTSGALSAGARQACMASGMVYLSKWILRVPP HLPGKFGQTVVHALSLMHRLSSFKCAAHDGTLHKKSTAFFSRSGQLDSGRQRAAKSAPPRTLYSKGRTGPQRDRENETTR GVAQKVIHRLLRNPSALRHNPTESLGNNGQSEGNKPAQIQCLDNPFANKLLPQRNERHALHRFCRQLTC >Mature_469_residues MRLVRSRLPLDVRDELVSLLGGMCFFLSTVEHVIPKPLPFFRVGLANLPLLISPDLLPFCAYARLVFLKVIGQALVSGTL FSYVFVLSLAGSTASGALMYALRFVPCRYLSCVGISVMGAFCSNVIQLTLARVLVFGAGVWYVLPLFCALGAVSSTLLGA LTGHFLSHSQWYAHLQNAACGQQDTAPPASLFFPVQAGCECTAPCSEHGLRPRVLRYVRMGTGLLLLLILLCVPRLSVQA SVCGIALLLYAATGGRIRWMTLAGLWVGTLACYLRPPVGRVWATVLGVPLTSGALSAGARQACMASGMVYLSKWILRVPP HLPGKFGQTVVHALSLMHRLSSFKCAAHDGTLHKKSTAFFSRSGQLDSGRQRAAKSAPPRTLYSKGRTGPQRDRENETTR GVAQKVIHRLLRNPSALRHNPTESLGNNGQSEGNKPAQIQCLDNPFANKLLPQRNERHALHRFCRQLTC
Specific function: Unknown
COG id: COG4769
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50957; Mature: 50957
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLVRSRLPLDVRDELVSLLGGMCFFLSTVEHVIPKPLPFFRVGLANLPLLISPDLLPFC CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEECCCHHHHH AYARLVFLKVIGQALVSGTLFSYVFVLSLAGSTASGALMYALRFVPCRYLSCVGISVMGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FCSNVIQLTLARVLVFGAGVWYVLPLFCALGAVSSTLLGALTGHFLSHSQWYAHLQNAAC HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GQQDTAPPASLFFPVQAGCECTAPCSEHGLRPRVLRYVRMGTGLLLLLILLCVPRLSVQA CCCCCCCCHHEEEEHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH SVCGIALLLYAATGGRIRWMTLAGLWVGTLACYLRPPVGRVWATVLGVPLTSGALSAGAR HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHH QACMASGMVYLSKWILRVPPHLPGKFGQTVVHALSLMHRLSSFKCAAHDGTLHKKSTAFF HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHH SRSGQLDSGRQRAAKSAPPRTLYSKGRTGPQRDRENETTRGVAQKVIHRLLRNPSALRHN HCCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCC PTESLGNNGQSEGNKPAQIQCLDNPFANKLLPQRNERHALHRFCRQLTC CHHHHCCCCCCCCCCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MRLVRSRLPLDVRDELVSLLGGMCFFLSTVEHVIPKPLPFFRVGLANLPLLISPDLLPFC CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEECCCHHHHH AYARLVFLKVIGQALVSGTLFSYVFVLSLAGSTASGALMYALRFVPCRYLSCVGISVMGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FCSNVIQLTLARVLVFGAGVWYVLPLFCALGAVSSTLLGALTGHFLSHSQWYAHLQNAAC HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GQQDTAPPASLFFPVQAGCECTAPCSEHGLRPRVLRYVRMGTGLLLLLILLCVPRLSVQA CCCCCCCCHHEEEEHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH SVCGIALLLYAATGGRIRWMTLAGLWVGTLACYLRPPVGRVWATVLGVPLTSGALSAGAR HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHH QACMASGMVYLSKWILRVPPHLPGKFGQTVVHALSLMHRLSSFKCAAHDGTLHKKSTAFF HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHH SRSGQLDSGRQRAAKSAPPRTLYSKGRTGPQRDRENETTRGVAQKVIHRLLRNPSALRHN HCCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCC PTESLGNNGQSEGNKPAQIQCLDNPFANKLLPQRNERHALHRFCRQLTC CHHHHCCCCCCCCCCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA